View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14323_low_62 (Length: 222)
Name: NF14323_low_62
Description: NF14323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14323_low_62 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 34 - 200
Target Start/End: Original strand, 36675229 - 36675395
Alignment:
| Q |
34 |
tccttcttgacttcaggaaatgtcatcgccggctgcatgttcttgtctccagtgtaagattatttctaaatctcttcccgcatttttcaattttaacgta |
133 |
Q |
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| T |
36675229 |
tccttcttgacttcaggaaatgtcatcgccggctgcatgttcttgtctccagtgtaagattatttctaaatctcttcccgcatttttcaattttaaccta |
36675328 |
T |
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| Q |
134 |
aaaattaacaatactaacatttgttgttaattttttccttcatgtccttaattatgcaggccaacat |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36675329 |
aaaaataacaatactaacatttgttgttaattttttccttcatgtccttaattatgcaggccaacat |
36675395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 34 - 200
Target Start/End: Original strand, 36685311 - 36685477
Alignment:
| Q |
34 |
tccttcttgacttcaggaaatgtcatcgccggctgcatgttcttgtctccagtgtaagattatttctaaatctcttcccgcatttttcaattttaacgta |
133 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36685311 |
tccttcttgacttcaggaaatgtcatcgccggctgcatgttcttgtctccagtgtaagattatttctaaatctcttcccgcatttttcaattttaaccta |
36685410 |
T |
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| Q |
134 |
aaaattaacaatactaacatttgttgttaattttttccttcatgtccttaattatgcaggccaacat |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36685411 |
aaaaataacaatactaacatttgttgttaattttttccttcatgtccttaattatgcaggccaacat |
36685477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 25991706 - 25991738
Alignment:
| Q |
126 |
ttaacgtaaaaattaacaatactaacatttgtt |
158 |
Q |
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| T |
25991706 |
ttaacgtaaaaattaacaatactaacatttgtt |
25991738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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