View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14323_low_8 (Length: 529)
Name: NF14323_low_8
Description: NF14323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14323_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 225 - 518
Target Start/End: Original strand, 6684331 - 6684624
Alignment:
| Q |
225 |
caatgaaaagataaaacctatcagcttagaccttcttcgttatatatnnnnnnn-gataaaatctatataannnnnnnnnnnnnnnncattggaggtaat |
323 |
Q |
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| T |
6684331 |
caatggaaagataaaacctatcagcttagaccttcttcgttatatataaaaaaaagataaaatctatataattttttctttgtttttcattggaggtaat |
6684430 |
T |
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| Q |
324 |
taactttacttgagatgtatctgctgcactaatggtaaacatctcttctaactgaaattcaaattttaatttatcacat--tatagaagtctaatatttt |
421 |
Q |
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| T |
6684431 |
taactttacttgagatgtatctgc---actaatggtaaacatctcttctaactgaaattcaaattttaatttatcacatattatagaagtctaatatttt |
6684527 |
T |
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| Q |
422 |
gtgctaaacccaatgttagcttcatttaaatatttcttatctacttaatgtggaactcgcaagggttgtcttatctctcacaagtaataataaataa |
518 |
Q |
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| T |
6684528 |
ctgctaaacccaacgttagcttcatttaaatatttattatctacttaatgtggaactcacaagggttgtctaatctctcacaagtaataataaataa |
6684624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 6684124 - 6684281
Alignment:
| Q |
18 |
tcaatatcatgattgggaaaaaatatggtcttagctaaaggagttcaaaccaaacttggtaaaataatgaacaatttgaatagtttcacgattaatatta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6684124 |
tcaatatcatgattgggaaaaaatatggtcttagctaaaggagttcaaaccaaacttggtaaaataatgaacaatttgaatagtttcacgattaatatta |
6684223 |
T |
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| Q |
118 |
gagatcgtgaagtgagaaagtttgttgaagaaacacctcaattcgagcaattaattta |
175 |
Q |
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| T |
6684224 |
gagatcgtgaagcgagaaagtttgttgaagaaacacctcaattcgagcaattaattta |
6684281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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