View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14323_low_9 (Length: 496)
Name: NF14323_low_9
Description: NF14323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14323_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 29 - 252
Target Start/End: Original strand, 30319017 - 30319241
Alignment:
| Q |
29 |
gttgtaaagttgaatcttagtcctagccaaacgacagactcactaagcacttacattactatattcattcattgnnnnnnnn-gtgaaaaatgatgatga |
127 |
Q |
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| T |
30319017 |
gttgtaaagttgaatcttagtcctagccaaacgacagactcactaagcacttacattactatattcattcattgaaaaaaaaagtgaaaaatgatgatga |
30319116 |
T |
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| Q |
128 |
ttatgaaccccaatatctcaatttgaagggacaatgtttcatgattcctcatgtacttcatatataatataatcatacattgcaactctgacaaacaaac |
227 |
Q |
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| T |
30319117 |
ttatgaaccccaatatctccatttgaagagacaatgtttcatgattcctcatgtacttcatatataatataatcatacattgcaactctgacaaacaaac |
30319216 |
T |
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| Q |
228 |
aatgtgacaatcctaaaaatcccag |
252 |
Q |
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| T |
30319217 |
aatgtgacaatcctaaaaatcccag |
30319241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 312 - 490
Target Start/End: Original strand, 30319297 - 30319475
Alignment:
| Q |
312 |
caagaacatatattcttaattcttaacttctcattcacatttcacacttgcaacataattaattaaagataataatgaatcctcaatttcaattactgtt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30319297 |
caagaacatatattcttaattcttaacttctcattcacatttcacactagcaacataattaattaaagataataatgaatcctcaatttcaattactgtt |
30319396 |
T |
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| Q |
412 |
attataacaataaaattataataataggggaatcaagcaaactaaaaagggaattaaagatggcatccaaagcaattac |
490 |
Q |
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| T |
30319397 |
attataacaataaaattataataataggggaatcaagcaaactaaaaagggaattaaagatggcatccaaagcaattac |
30319475 |
T |
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