View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14324_high_2 (Length: 656)
Name: NF14324_high_2
Description: NF14324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14324_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 571; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 20 - 642
Target Start/End: Original strand, 42536635 - 42537257
Alignment:
| Q |
20 |
aaaaccaatatcctagactcatttgagccacttttcttcttggagatgccaaacttttcaacttcatttgttttagtttccaaggccaattccctctctt |
119 |
Q |
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| T |
42536635 |
aaaaccaatatcctagactcatttgagccacttttcttcttggagatgccaaacttttcaacttcatttgttttagtttccaaggccaattccctctctt |
42536734 |
T |
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| Q |
120 |
cttggttcctatctaagaacttgatatttttcaaacaggacctacttagagagatattattcctatcagctaacttctgcacaagtgttggatcaatctt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42536735 |
cttggttcctatctaagaacttgatatttttcaaacaggacctacttagagagatattattcctatcagctaacttctgcacaagtgttggatcaatctt |
42536834 |
T |
|
| Q |
220 |
ttctcctttccagtcaaatatattaaatgccacagtaggtccacgatgagaatttatttttggcccataaattctaattaatgaaaatctattttcatca |
319 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42536835 |
ttctcctttccagtcaaatatattaaatgccactgtaggtccacgatgagaatttatttttggcccataaattctaattaatgaaaatctattttcatca |
42536934 |
T |
|
| Q |
320 |
tgtggatgttgaagactcattaatgcattaacaagccaattaatcaaataccttgttcttgtactaatcactattagtcccactgagtctgcgtggtcta |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42536935 |
tgtggatgttgaagactcattaatgcattaacaagccaattaatcaaataccttgttcttgtactaatcactattagtcccactgagtctgcgtggtcta |
42537034 |
T |
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| Q |
420 |
atcctctacactcaatttccaatctttcatcattcatgtccatgccttgtagctccacaatttctgatgatgatgatacctcattttgctcttcattagt |
519 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
42537035 |
atcctctacactcaatttccaatctttcatcattcatgtccatgccttgtaactccacaatttctgataatgatgatacctcattttgctcttctttagt |
42537134 |
T |
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| Q |
520 |
cttaaccctctggttctcaggagaagcgagtcctaataatccagagtttggtggtgcactatcatttcgacgagagctagaagtgtgacattgtgcaaat |
619 |
Q |
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|||| |||||||||||||||||||||||| |||||||||| ||| |||||| |||||||| || ||| || ||||||||||||||||||||||||||||| |
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| T |
42537135 |
cttatccctctggttctcaggagaagcgaatcctaataattcagcgtttggcggtgcactctcgttttgatgagagctagaagtgtgacattgtgcaaat |
42537234 |
T |
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| Q |
620 |
gtaggaacaagacttataattcc |
642 |
Q |
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||||||||||||||||||||||| |
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| T |
42537235 |
gtaggaacaagacttataattcc |
42537257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 392 - 492
Target Start/End: Original strand, 42530893 - 42530992
Alignment:
| Q |
392 |
attagtcccactgagtctgcgtggtctaatcctctacactcaatttccaatctttcatcattcatgtccatgccttgtagctccacaatttctgatgatg |
491 |
Q |
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|||||||||||| ||| ||| ||||||||||||||||| |||||||| ||||||||| ||||||| |||||||||||||||||| ||||| || |||| |
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| T |
42530893 |
attagtcccactaagtttgcatggtctaatcctctacatacaatttcc-atctttcattcttcatgttcatgccttgtagctccacgatttccgacgatg |
42530991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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