View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14324_high_4 (Length: 360)
Name: NF14324_high_4
Description: NF14324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14324_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 76 - 344
Target Start/End: Complemental strand, 38419565 - 38419300
Alignment:
| Q |
76 |
tatctgagtatttgagacaaggcacttgatcgccttgcatcaggcatacttcaccgtatctgagtatttgagagacaatggcgtactttgtctcaaaaac |
175 |
Q |
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| T |
38419565 |
tatctgagtatttgagacaaggcacttgatcgccttgcatcaggcatacttcaccgtatctgagtatttgagagacaatggcgtactttgtctcaaaaac |
38419466 |
T |
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| Q |
176 |
ctaattaatttcaaaataattcatcttagttgatgattacttgcatcacaagttatctgttttctttggttaattttgttgaaatttcttaggaagtttg |
275 |
Q |
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| T |
38419465 |
ctaattaatttcaaaataattcatcttagttgatgattacttgcatcacaagttatctgttttctttggttaattttgttgaaatttcttaggaagtttg |
38419366 |
T |
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| Q |
276 |
ttaagttttgcattgtgtatataagagatgcattctattgcaaattataataaatacaaaacttccaat |
344 |
Q |
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| T |
38419365 |
ttaagttttgcattgtgtatataagagatgcattgtattgcaaatt---ataaatacaaaacttccaat |
38419300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 38420223 - 38420161
Alignment:
| Q |
17 |
atgaaaatataatttgctaatctactattgtttcatcatcctccttggcagacaaaccatatc |
79 |
Q |
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| T |
38420223 |
atgaaaatataatttgctaatctactattgtttcatcatcctccttggcagacaaaccatatc |
38420161 |
T |
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