View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14324_high_6 (Length: 344)
Name: NF14324_high_6
Description: NF14324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14324_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 47201631 - 47201295
Alignment:
| Q |
1 |
accaaattttcctttcacactttcacttaagttgtataagtaccaatcgaaattttgactcgctattccctaattagtaaaccatttaagcaatgatcgt |
100 |
Q |
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| T |
47201631 |
accaaattttcctttcacactttcacttaagttgtataagtaccaatcgaaattttgactcactattccctaattagtaaaccatttaagcaatgatcgt |
47201532 |
T |
|
| Q |
101 |
gataagatagaagcatgtaataatcaaatcaaagaaaaaacaaacacaatgatagattattttgaagaggaatnnnnnnngggtgtaccttttatgttac |
200 |
Q |
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| T |
47201531 |
gataagatagaagcatgtaataatcaaatcaaagaaaaaacaaacacaatgatagattattttgaacaggaataaaaaaagggtgtaccttttatgttac |
47201432 |
T |
|
| Q |
201 |
agttggttttgcacaaggggcatagtgcataatcagttgagggaactgtgagcattgtcccacacaagtgacagaacaaaaaatcgcgaccacgtgaata |
300 |
Q |
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| T |
47201431 |
acttggttttgcacaaggggcacagtgcataatcagttgagggaactgtgagcattgtcccacacaagtgacagaacaaaaaatcgcgaccacgtgaata |
47201332 |
T |
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| Q |
301 |
cattggcactgtttgaggtaacaaagtatattcttgg |
337 |
Q |
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|||||||||||||||||||||||||||||||| |||| |
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| T |
47201331 |
cattggcactgtttgaggtaacaaagtatattgttgg |
47201295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 230 - 314
Target Start/End: Original strand, 46442869 - 46442953
Alignment:
| Q |
230 |
taatcagttgagggaactgtgagcattgtcccacacaagtgacagaacaaaaaatcgcgaccacgtgaatacattggcactgttt |
314 |
Q |
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||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46442869 |
taatcagttgagggaaccgtgagcattgttccacacaagtgacagaacaaaaaatcgcgaccacgtgaatacattggcactgttt |
46442953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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