View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14325_high_3 (Length: 473)
Name: NF14325_high_3
Description: NF14325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14325_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 4 - 343
Target Start/End: Complemental strand, 27752535 - 27752195
Alignment:
| Q |
4 |
atgtcgaagaatatgtctgataa-aaaagtagtcaaacattaattaactctggatttaactttatatagtggtatatataaagtattttatccccttata |
102 |
Q |
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| T |
27752535 |
atgtccaagaaaaggtctgataataaaagtagtcaaacattaattaactctggatttaactttatatagtggtatatataaagtattttatccccttata |
27752436 |
T |
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| Q |
103 |
ttaacattcatatattcttgtttgacatacaggtttactcccctgtggaactgatgatgattgtgcaaatgatccatgtatccctcccgaatatccacat |
202 |
Q |
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| T |
27752435 |
ttaacattcatatatttttgtttgacatacaggtttactcccctgcggaactgatgatgattgtgcaaatgatccatgtattcatcccgaatatccacat |
27752336 |
T |
|
| Q |
203 |
tgtcatatggaacaatgtcattgcgtttaagcatgaaaattaagttaaaataaatttcatgttacttctaattagtttataatttatcatggacatcaca |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
27752335 |
tgtcatatggaacaatgtcattgcgtttaagcatgaaaattaagttaaaataaatttcatgttacttctaattagtttataatttatcatgggcatcaca |
27752236 |
T |
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| Q |
303 |
atgtttttccaaattttaaaatttctcgcattttaatttat |
343 |
Q |
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| T |
27752235 |
atgtttttccaaatttaaaaatttctcgcattttaatttat |
27752195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 35984646 - 35984708
Alignment:
| Q |
76 |
atatataaagtattttatccccttatattaacattcatatattcttgtttgacatacaggttt |
138 |
Q |
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| T |
35984646 |
atatataaaatattttatccccttctagtaacattcatttattcttaattgaaatacaggttt |
35984708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 351 - 456
Target Start/End: Original strand, 12640943 - 12641049
Alignment:
| Q |
351 |
ttcttgtgaagcgaggagctctttcaaatgttggtttatcgcgacaccattcccctcc-gacgacctgcttcctttgttgaagaatgatggttcagaaac |
449 |
Q |
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|||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
12640943 |
ttcttgcgaagtgaggagctctatcaaatgttggtttatcgcgacaccattcccctcctgacgacctgcttcctttgttgaagaatgatgcttcaggaac |
12641042 |
T |
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| Q |
450 |
ttggttc |
456 |
Q |
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| T |
12641043 |
ttggttc |
12641049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 351 - 456
Target Start/End: Original strand, 3422663 - 3422768
Alignment:
| Q |
351 |
ttcttgtgaagcgaggagctctttcaaatgttggtttatcgcgacaccattcccctccgacgacctgcttcctttgttgaagaatgatggttcagaaact |
450 |
Q |
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|||||| ||||||||||||||| ||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
3422663 |
ttcttgcgaagcgaggagctctatcaaatgttggtttaccgcgacaccattcccccctgacgacctgcttcctttgttgaagaatgatgtttcaggaact |
3422762 |
T |
|
| Q |
451 |
tggttc |
456 |
Q |
| |
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|||||| |
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| T |
3422763 |
tggttc |
3422768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 189
Target Start/End: Complemental strand, 41530651 - 41530577
Alignment:
| Q |
115 |
tattcttgtttgacatacaggtttactcccctgtggaactgatgatgattgtgcaaatgatccatgtatccctcc |
189 |
Q |
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||||||| |||||||||||||||| ||||| |||| ||| | |||||||||||| ||||| ||||||| |||| |
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| T |
41530651 |
tattcttatttgacatacaggttttctcccttgtgtgactaaggatgattgtgcatatgatgaatgtatctctcc |
41530577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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