View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14325_low_1 (Length: 742)

Name: NF14325_low_1
Description: NF14325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14325_low_1
NF14325_low_1
[»] chr6 (4 HSPs)
chr6 (265-724)||(6905811-6906280)
chr6 (42-201)||(6905583-6905747)
chr6 (132-190)||(13344028-13344086)
chr6 (614-677)||(6897362-6897425)
[»] scaffold0013 (2 HSPs)
scaffold0013 (47-201)||(11287-11443)
scaffold0013 (132-201)||(16237-16305)
[»] chr1 (3 HSPs)
chr1 (47-201)||(2705814-2705969)
chr1 (132-201)||(2700881-2700949)
chr1 (155-189)||(15822887-15822921)
[»] chr2 (1 HSPs)
chr2 (132-201)||(8749350-8749418)
[»] chr3 (3 HSPs)
chr3 (132-190)||(10486564-10486622)
chr3 (133-189)||(22810650-22810706)
chr3 (58-92)||(10486661-10486695)


Alignment Details
Target: chr6 (Bit Score: 396; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 265 - 724
Target Start/End: Original strand, 6905811 - 6906280
Alignment:
Q  265 gtgattaacattggctaggctcttccttttcaattgcttctctatttctttcaatctgtgtcaacatttaatacatgacaaaataatctatacctttgaa 364  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6905811 gtgattaacattggctaggctcttccttttcaattgcttctctatttctttcaatctgtgtcaacatttaatacatgacaaaataatctatacctttgaa 6905910  T
Q  365 ttttatacatatttcattggacctaagtcctgtaattaactaaatcaagcaacatggactgtgagaataaaatggtcaataacttcatggagaagatgca 464  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  6905911 ttttatacatatttcataggacctaagtcctgtaattaactaaatcaagcaacatggactg--agaataaaatggtcaataacttcatggagaagatgca 6906008  T
Q  465 gcattagggtctgtactggagataagccgaacctcgtatagatcattttcaccgttacctgcagcacaaatattatgtcagaatccattcattcattttc 564  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6906009 gcattagggtctgtattggagataagccgaacctcgtatagatcattttcgccgttacctgcagcacaaatattatgtcagaatccattcattcattttc 6906108  T
Q  565 atgcacattttgtgtctttaaattctcaagactaagcgaaa------------tcaaaaaatttactcaccaacttctgctgtaattccaggcccaaaga 652  Q
    || |||||||||||||||||||||||||||||||||| |||            |||||||||||||||||||||||||||||||||||||||||||||||    
T  6906109 atacacattttgtgtctttaaattctcaagactaagcaaaataaatatagttttcaaaaaatttactcaccaacttctgctgtaattccaggcccaaaga 6906208  T
Q  653 atgaagtaaatttagcctataacaccaaatagaagaagttgagaaatatattaaaactcctgaggatcttac 724  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  6906209 atgaagtaaatttagcctataacaccaaatagaagaagttgagaaatatattaaaactccagaggatcttac 6906280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 42 - 201
Target Start/End: Original strand, 6905583 - 6905747
Alignment:
Q  42 tctaaaccctaaccccaacagagctcatgataccatgtagaaaaacatatgagtaataattgt-tgttatattattatgnnnnnnng----ggaaccttt 136  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||            |||||||||    
T  6905583 tctaacccctaaccctaacagagctcatgataccatgtagaaaaacatatgagtaataattgtctgttatattattatgaaggaaaaaaaaggaaccttt 6905682  T
Q  137 tataggagagaaatagaaagtcaactcctttattttaggagtaaaataatgacttcttaaacaag 201  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  6905683 tataggagagaaatacatagtcaactcctttattttaggagtaaaataatgacttcttaaacaag 6905747  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 13344086 - 13344028
Alignment:
Q  132 ccttttataggagagaaatagaaagtcaactcctttattttaggagtaaaataatgact 190  Q
    ||||| |||||||||||||| |||||||||||||||||||| ||||||| |||||||||    
T  13344086 cctttaataggagagaaatacaaagtcaactcctttattttgggagtaatataatgact 13344028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 614 - 677
Target Start/End: Original strand, 6897362 - 6897425
Alignment:
Q  614 tttactcaccaacttctgctgtaattccaggcccaaagaatgaagtaaatttagcctataacac 677  Q
    |||| |||||| |||| | | |||||||||||||||||||||||| ||||||||||||||||||    
T  6897362 tttagtcaccatcttcagatataattccaggcccaaagaatgaagcaaatttagcctataacac 6897425  T

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Target: scaffold0013 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 47 - 201
Target Start/End: Complemental strand, 11443 - 11287
Alignment:
Q  47 accctaaccccaacagagctcatgataccatgtagaaaaacatatgagtaataattgt-tgttatattattatgnnnnnnng--ggaaccttttatagga 143  Q
    |||||||||| |||||||||||||||||||||||||||| |||||| || |||||||| | |||||||||||||          ||  ||||||||||||    
T  11443 accctaaccctaacagagctcatgataccatgtagaaaagcatatgggtgataattgtctattatattattatgaagaaaaaaaggctccttttatagga 11344  T
Q  144 gagaaatagaaagtcaactcctttattttaggagtaaaataatgacttcttaaacaag 201  Q
    |||||||| ||||||||||||||||||| |||||||  |||||||| |||||||||||    
T  11343 gagaaatacaaagtcaactcctttatttcaggagtactataatgac-tcttaaacaag 11287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 16305 - 16237
Alignment:
Q  132 ccttttataggagagaaatagaaagtcaactcctttattttaggagtaaaataatgacttcttaaacaag 201  Q
    ||||||||| |||||||||| ||||||||||||||||||| |||||||  |||||||| |||||||||||    
T  16305 ccttttataagagagaaatacaaagtcaactcctttatttcaggagtactataatgac-tcttaaacaag 16237  T

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Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 47 - 201
Target Start/End: Original strand, 2705814 - 2705969
Alignment:
Q  47 accctaaccccaacagagctcatgataccatgtagaaaaacatatgagtaataattgt-tgttatattattatg--nnnnnnngggaaccttttatagga 143  Q
    |||||||||| |||||||||| |||||||||||||||||||||||| || |||||||| |||||||||||||||          ||  ||||||||||||    
T  2705814 accctaaccctaacagagctc-tgataccatgtagaaaaacatatgggtgataattgtctgttatattattatgaaggaaaaaaggctccttttatagga 2705912  T
Q  144 gagaaatagaaagtcaactcctttattttaggagtaaaataatgacttcttaaacaag 201  Q
    |||||||| ||||||||||||||||||| |||||||  |||||||| |||||||||||    
T  2705913 gagaaatacaaagtcaactcctttatttcaggagtactataatgac-tcttaaacaag 2705969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 2700881 - 2700949
Alignment:
Q  132 ccttttataggagagaaatagaaagtcaactcctttattttaggagtaaaataatgacttcttaaacaag 201  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||  |||||||| |||||||||||    
T  2700881 ccttttataggagagaaatacaaagtcaactcctttatttcaggagtactataatgac-tcttaaacaag 2700949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 189
Target Start/End: Complemental strand, 15822921 - 15822887
Alignment:
Q  155 agtcaactcctttattttaggagtaaaataatgac 189  Q
    |||||||||||||||||||||||||| ||||||||    
T  15822921 agtcaactcctttattttaggagtaatataatgac 15822887  T

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Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 8749350 - 8749418
Alignment:
Q  132 ccttttataggagagaaatagaaagtcaactcctttattttaggagtaaaataatgacttcttaaacaag 201  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||| ||||||    
T  8749350 ccttttataggagagaaatacaaagtcaactcctttattttaggagtaatataatga-ttcttgaacaag 8749418  T

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Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 10486622 - 10486564
Alignment:
Q  132 ccttttataggagagaaatagaaagtcaactcctttattttaggagtaaaataatgact 190  Q
    |||||||||||||| ||||| ||| | |||||||||||||||||||||| |||||||||    
T  10486622 ccttttataggagaaaaatacaaaattaactcctttattttaggagtaatataatgact 10486564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 22810650 - 22810706
Alignment:
Q  133 cttttataggagagaaatagaaagtcaactcctttattttaggagtaaaataatgac 189  Q
    ||||||||||||| ||||| |||||| ||| ||||||||||||||||| ||||||||    
T  22810650 cttttataggagaaaaatacaaagtctactactttattttaggagtaatataatgac 22810706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 58 - 92
Target Start/End: Complemental strand, 10486695 - 10486661
Alignment:
Q  58 aacagagctcatgataccatgtagaaaaacatatg 92  Q
    ||||||||||||||||||||||||||||| |||||    
T  10486695 aacagagctcatgataccatgtagaaaaatatatg 10486661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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