View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14325_low_10 (Length: 318)
Name: NF14325_low_10
Description: NF14325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14325_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 41919292 - 41919614
Alignment:
| Q |
1 |
atgcaacattgggaaacactaagaaaaattcactctaaaagtgatcaacacattgatcatgcggactctgttgattgggaagcagtaagagatgcaaatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41919292 |
atgcaacattgggaaacactaagaaaaatccactctaaaagtgatcaacacattgatcatgcggactctgttgattgggaagcagtaagagatgcaaatg |
41919391 |
T |
|
| Q |
101 |
ttaatgaagttgctacagctattaaaaagcgtggtcaacaaaacataattgcttataaaattcaggt--------------aaaaaatatttagttttta |
186 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || | | || |
|
|
| T |
41919392 |
ttaatgaagttgctgcagctattaaaaagcgtggtcaacaaaacataattgcttataaaattcaggttagtttgtagttaataataatatata-tatata |
41919490 |
T |
|
| Q |
187 |
acttttgacatgttattattgagataattataattagtacgtacgtacattatatatttgtaggttgcattgaagggatttatggttaaccatggaagca |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41919491 |
acttttgacatgttattattgagataattataatta----gtacgtacattatatatttgtaggttgcattgaagggatttatggttaaccatggaagca |
41919586 |
T |
|
| Q |
287 |
tgaagttagaatggttaaaagatatacc |
314 |
Q |
| |
|
|||| ||||||||||||||||||||||| |
|
|
| T |
41919587 |
tgaatttagaatggttaaaagatatacc |
41919614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 1688828 - 1688995
Alignment:
| Q |
17 |
cactaagaaaaattcactctaaaagtgatcaacacattgatcatgcggactctgttgattgggaagcagtaagagatgcaaatgttaatgaagttgctac |
116 |
Q |
| |
|
||||||||||||| ||| || |||||||| ||||||||| |||| ||| ||| |||||||||||||||||||| |||| || ||| |||||||||| |
|
|
| T |
1688828 |
cactaagaaaaatccacagtagaagtgatcgacacattgaccatgtggattctattgattgggaagcagtaagaaatgccaaagttggtgaagttgctga |
1688927 |
T |
|
| Q |
117 |
agctattaaaaagcgtggtcaacaaaacataattgcttataaaattcaggtaaaaaatatttagtttt |
184 |
Q |
| |
|
||||||||||| |||||||||||| ||||| |||||| | ||||| |||||| ||||||| ||||||| |
|
|
| T |
1688928 |
agctattaaaatgcgtggtcaacataacattattgctaaaaaaatacaggtacaaaatatatagtttt |
1688995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 137
Target Start/End: Original strand, 1305125 - 1305195
Alignment:
| Q |
67 |
tctgttgattgggaagcagtaagagatgcaaatgttaatgaagttgctacagctattaaaaagcgtggtca |
137 |
Q |
| |
|
||||||||||||||| | |||||| ||||||| | ||| ||||| |||| |||||||||||| |||||||| |
|
|
| T |
1305125 |
tctgttgattgggaaacggtaagaaatgcaaaagctaaagaagtggctaaagctattaaaaaccgtggtca |
1305195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University