View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14325_low_3 (Length: 520)
Name: NF14325_low_3
Description: NF14325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14325_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 513
Target Start/End: Complemental strand, 34960816 - 34960319
Alignment:
| Q |
18 |
acgttagaggttactatcaatttatttagatgttagtgttcctctctacaaactacaaagtactaacttaactaatgtcacggaatgactcattttgtca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34960816 |
acgttagaggttactatcaatttatttagatgttagtgttcctctctacaaactacaaagtactaacttaactaatgtcacggaatgactcattttgtca |
34960717 |
T |
|
| Q |
118 |
ccgaaaagaacaagnnnnnnntgagtannnnnnnnnnnnnnnnnnnaacagttgaaaaccttttgttagacaaaagggcagtaaaatgcttgtgtttttt |
217 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34960716 |
ccgaaaagaacaagaaaaaaatgagtttttttgtttttgtttttttaacagttgaaaaccttttgttagacaaaagggcagtaaaatgcttgtgtttttt |
34960617 |
T |
|
| Q |
218 |
aaatagtaataatttgatataatttatcaattcattctatgaattaaatttatgcgtttttaaattgaatttcatgnnnnnnnttgaattcaatnnnnnn |
317 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
34960616 |
aaataataataatttgatataatttatcaattcattctatgaattaaatttatgcgtttttaaattgaatttcatgaaaaaaattgaattcaataaaaaa |
34960517 |
T |
|
| Q |
318 |
nnn-cttaa-cgtgtgctatgctatcattatagttgggaaaataagccagcaaaatatcactattactttagcatcatctgtgggggcttaaagcatgat |
415 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34960516 |
aaaacttaaacgtgtgctatgctatcattatagttgggaaaataagccagcaaaatatcactattactttagcatcatctgtgggggcttaaagcatgat |
34960417 |
T |
|
| Q |
416 |
gctatagatgctcatgcccaattgcatttgaattagatcctctacgattgttgtaggatatttaatttccgtttattattttattttaaattactaca |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
34960416 |
gctatagatgctcatgcccaattgcatttgaattagatcccctacaattgttgtaggatatttaatttccggttatgattttattttaaattactaca |
34960319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University