View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14325_low_6 (Length: 338)
Name: NF14325_low_6
Description: NF14325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14325_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 12 - 330
Target Start/End: Original strand, 38697392 - 38697710
Alignment:
| Q |
12 |
aaagcaagaatgtctgcacaggacaccgttttaggacatgcagcctctatttgtgccttagcttcgttgattacttcaaagccacgtaaacttggattgt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38697392 |
aaagcaagaatgtctgcacaggacaccgttttaggacatgcagcctctatttgtgccttagcttcgttgattacttcaaagccacgtaaacttggattgt |
38697491 |
T |
|
| Q |
112 |
ttgcaggatggtctctctcagatcgaatacctggtatggaatctaataaaacagaaccatcacatcctctgacaaagcaatcatgaaaatgcattctaat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38697492 |
ttgcaggatggtctctctcagatcgaatacctggtatggaatctaataaaacagaaccatcacatcctctgacaaagcaatcatgaaaatgcattctaat |
38697591 |
T |
|
| Q |
212 |
caaaccagcagcgatgccggggttgagtgaaacagctttgtttacagctcttctaacaattgcctccgcggatggacatgttgtcttgtagaaaccatac |
311 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38697592 |
caaaccagcagtgatgccggggttgagtgaaacagctttgtttacagctcttctaacaattgcctccgcggatggacatgttgtcttgtagaaaccatac |
38697691 |
T |
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| Q |
312 |
ttcaaagatgttgatgatg |
330 |
Q |
| |
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||||||||||||||||||| |
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| T |
38697692 |
ttcaaagatgttgatgatg |
38697710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 12 - 330
Target Start/End: Complemental strand, 38628889 - 38628571
Alignment:
| Q |
12 |
aaagcaagaatgtctgcacaggacaccgttttaggacatgcagcctctatttgtgccttagcttcgttgattacttcaaagccacgtaaacttggattgt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38628889 |
aaagcaagaatgtctgcacaggacaccgttttaggacatgcagcctctatttgtgccttagcttcgttgattacttcaaagccacgtaaacttggattgt |
38628790 |
T |
|
| Q |
112 |
ttgcaggatggtctctctcagatcgaatacctggtatggaatctaataaaacagaaccatcacatcctctgacaaagcaatcatgaaaatgcattctaat |
211 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38628789 |
ttgcaggatggtctctctcagattgaatacctggtatggaatctaataaaacagaaccatcacatcctctgacaaagcaatcatgaaaatgcattctaat |
38628690 |
T |
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| Q |
212 |
caaaccagcagcgatgccggggttgagtgaaacagctttgtttacagctcttctaacaattgcctccgcggatggacatgttgtcttgtagaaaccatac |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
38628689 |
caaaccagcagcgatgccggggttgagtgaaacagctttgtttacagctcttctaacaattgcctctacggatgaacatgttgtcttgtagaaaccatac |
38628590 |
T |
|
| Q |
312 |
ttcaaagatgttgatgatg |
330 |
Q |
| |
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||||||||||| ||||||| |
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| T |
38628589 |
ttcaaagatgtcgatgatg |
38628571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 183 - 291
Target Start/End: Complemental strand, 14256401 - 14256293
Alignment:
| Q |
183 |
acaaagcaatcatgaaaatgcattctaatcaaaccagcagcgatgccggggttgagtgaaacagctttgtttacagctcttctaacaattgcctccgcgg |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| | || || || ||||||||||||||||||| | || ||||| || |||||||| || | |
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| T |
14256401 |
acaaagcaatcatgaaaatgcattctaatcaatccagcacctataccaggattgagtgaaacagctttgtcaattgcacttctcactattgcctcagcag |
14256302 |
T |
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| Q |
283 |
atggacatg |
291 |
Q |
| |
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||||||||| |
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| T |
14256301 |
atggacatg |
14256293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 30652277 - 30652335
Alignment:
| Q |
17 |
aagaatgtctgcacaggacaccgttttaggacatgcagcctctatttgtgccttagctt |
75 |
Q |
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||||||||||||||| | || |||||||||||||| ||||||||||||| |||||||| |
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| T |
30652277 |
aagaatgtctgcacacaagacagttttaggacatgcggcctctatttgtgtcttagctt |
30652335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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