View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14326_low_1 (Length: 600)

Name: NF14326_low_1
Description: NF14326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14326_low_1
NF14326_low_1
[»] chr4 (11 HSPs)
chr4 (1-579)||(33750212-33750796)
chr4 (165-373)||(33718945-33719153)
chr4 (167-373)||(33735618-33735824)
chr4 (166-361)||(33720976-33721171)
chr4 (1-114)||(33735871-33735984)
chr4 (11-112)||(33719203-33719304)
chr4 (401-468)||(33718850-33718917)
chr4 (392-458)||(33720864-33720930)
chr4 (1-99)||(33721214-33721318)
chr4 (392-445)||(33735540-33735593)
chr4 (529-577)||(33720787-33720835)
[»] chr7 (2 HSPs)
chr7 (303-355)||(6583050-6583102)
chr7 (303-355)||(6568891-6568943)
[»] chr6 (1 HSPs)
chr6 (312-358)||(13409875-13409921)
[»] chr1 (1 HSPs)
chr1 (309-367)||(44331866-44331925)


Alignment Details
Target: chr4 (Bit Score: 445; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 1 - 579
Target Start/End: Complemental strand, 33750796 - 33750212
Alignment:
Q  1 acctcatcagttgttgaaaatcagtttccccaagcctatcccaaaaatcacaatccatattattcccaaatcccatatttgtctcactttgaatttcttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  33750796 acctcatcagttgttgaaaatcagtttccccaagcctatcccaaaaatcacaatccatattattcccaaatccaatatttgtctcactttgcatttcttg 33750697  T
Q  101 attcatattctcgttctcattctcat------cttttacattctctaaatcaggagcaaccacttctgactgcttaagtgaatcatcaaccattggaaaa 194  Q
    ||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33750696 attcatattctcgttctcattctcattctcatcttttacattctctaaatcaggagcaaccacttctgactgcttaagtgaatcatcaaccattggaaaa 33750597  T
Q  195 ttgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccgtggaaaatgttccgagccaaacacgggtgg 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33750596 ttgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccgtggaaaatgttccgagccaaacacgggtgg 33750497  T
Q  295 cacgtctcgggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctctgtacttcttcttagctctcnnnnnnnnnnnnnnnnnctc 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 |||    
T  33750496 cacgtctcgggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctctgtacttcttcttagctctcttttgtttttgttttttctc 33750397  T
Q  395 ttctgggaagaaatcgcatcctaagcatcctgcaatgttgcattcctggcaggtttccatgttcgcaggtggaacaattctttctaannnnnnnnnnnnn 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||                 
T  33750396 ttctgggaagaaatcgcatcctaagcatcctgcaatgttgcattcctggcaggtttctatgttcgcaggtggaacaattctttctaagctgctgctgctg 33750297  T
Q  495 nnnnntccgatggcgggatttgggaggtgaaattcggtggaggtggagccggagacgacattggttaaggcagagacgatgacag 579  Q
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33750296 ctgcttccgatggcgggatttgggaggtgaaattcggtggaggtggagccggagacgacattggttaaggcagagacgatgacag 33750212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 165 - 373
Target Start/End: Complemental strand, 33719153 - 33718945
Alignment:
Q  165 tgcttaagtgaatcatcaaccattggaaaattgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccg 264  Q
    |||||||| || |||||||| | |||||||||||| || |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  33719153 tgcttaagggattcatcaacaagtggaaaattgagctttgccctcggcccacgaaactcgatggcggcattgtcataagctctggcagcttcctccgccg 33719054  T
Q  265 tggaaaatgttccgagccaaacacgggtggcacgtctcgggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctctgtacttctt 364  Q
    ||| ||| |||||||||||||||||    |||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| ||||||||    
T  33719053 tggtaaaggttccgagccaaacacgaacagcacgtctcgggtcacgaatctcagcagcccattttccccatggtctctgtctcactcctctatacttctt 33718954  T
Q  365 cttagctct 373  Q
     ||||||||    
T  33718953 tttagctct 33718945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 167 - 373
Target Start/End: Complemental strand, 33735824 - 33735618
Alignment:
Q  167 cttaagtgaatcatcaaccattggaaaattgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccgtg 266  Q
    |||||| || |||||||| | |||||||||||| |||||||| |||||||||||||| || ||||||||||| |||||||||||||||||||||||||||    
T  33735824 cttaagcgattcatcaacgactggaaaattgagcttggcccttggcccacggaactcaatagcagcattgtcgtaagctctggcagcttcctccgccgtg 33735725  T
Q  267 gaaaatgttccgagccaaacacgggtggcacgtctcgggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctctgtacttcttct 366  Q
    | ||| ||||| ||||||||||||   |||||||| ||||||||||| |||||||||||||| |||||||| || || ||||||||||||||||||||||    
T  33735724 gtaaaggttccaagccaaacacggaccgcacgtctagggtcacgaatctcagcagcccattttccccatggcctctgcctcactcctctgtacttcttct 33735625  T
Q  367 tagctct 373  Q
    |||||||    
T  33735624 tagctct 33735618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 166 - 361
Target Start/End: Complemental strand, 33721171 - 33720976
Alignment:
Q  166 gcttaagtgaatcatcaaccattggaaaattgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccgt 265  Q
    ||||||| || |||||||| | ||||||||| || ||||| |||||||| ||||||||||| || |||||||| |||||||| |||||||||||||||||    
T  33721171 gcttaagagattcatcaacaagtggaaaattaagcttggctctcggcccgcggaactcgatagcggcattgtcgtaagctctagcagcttcctccgccgt 33721072  T
Q  266 ggaaaatgttccgagccaaacacgggtggcacgtctcgggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctctgtactt 361  Q
    || ||| ||||| |||||||||||    |||||||||||||||||||| |||||||||||||| ||||||||||| || |||||||||||||||||    
T  33721071 ggtaaaggttccaagccaaacacgaaccgcacgtctcgggtcacgaatctcagcagcccattttccccatggtctctgcctcactcctctgtactt 33720976  T

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Target: chr4; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 33735984 - 33735871
Alignment:
Q  1 acctcatcagttgttgaaaatcagtttccccaagcctatcccaaaaatcacaatccatattattcccaaatcccatatttgtctcactttgaatttcttg 100  Q
    ||||||| |||||||||||||||| ||| || |  ||||||||||||||||||| | ||||| || ||||||||||| |||||||| |||| ||||||||    
T  33735984 acctcattagttgttgaaaatcagcttctccgatactatcccaaaaatcacaattcttattactctcaaatcccatagttgtctcaatttgtatttcttg 33735885  T
Q  101 attcatattctcgt 114  Q
    ||||||||||||||    
T  33735884 attcatattctcgt 33735871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 33719304 - 33719203
Alignment:
Q  11 ttgttgaaaatcagtttccccaagcctatcccaaaaatcacaatccatattattcccaaatcccatatttgtctcactttgaatttcttgattcatattc 110  Q
    |||||||||||||| ||| ||||  |||||| |||||||||||||| |||||||| |||| ||| |  |||| ||| |||| ||||||||||||||||||    
T  33719304 ttgttgaaaatcaggttcaccaatgctatccaaaaaatcacaatccttattattctcaaaccccgtcattgtttcaatttgcatttcttgattcatattc 33719205  T
Q  111 tc 112  Q
    ||    
T  33719204 tc 33719203  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 401 - 468
Target Start/End: Complemental strand, 33718917 - 33718850
Alignment:
Q  401 gaagaaatcgcatcctaagcatcctgcaatgttgcattcctggcaggtttccatgttcgcaggtggaa 468  Q
    |||||||| ||||||||| |||||||| |||||||||||  ||||||||||||||||||  |||||||    
T  33718917 gaagaaattgcatcctaaacatcctgctatgttgcattcgcggcaggtttccatgttcgttggtggaa 33718850  T

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Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 392 - 458
Target Start/End: Complemental strand, 33720930 - 33720864
Alignment:
Q  392 ctcttctgggaagaaatcgcatcctaagcatcctgcaatgttgcattcctggcaggtttccatgttc 458  Q
    |||||| |||||||||| ||||||||| |||||||| |||||||||||| | |||||||| ||||||    
T  33720930 ctcttcagggaagaaattgcatcctaaacatcctgctatgttgcattcccgacaggtttctatgttc 33720864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 33721318 - 33721214
Alignment:
Q  1 acctcatcagttgttgaaaatcagtttc---cccaagcctatcccaaaaatcacaatc---catattattcccaaatcccatatttgtctcactttgaat 94  Q
    ||||||| |||||||||||||||| |||   |||||  ||||||||||||||||| ||   | |||||||||||||||||||  |||||||| |||| ||    
T  33721318 acctcataagttgttgaaaatcagcttcttccccaatactatcccaaaaatcacattcagtcgtattattcccaaatcccatcgttgtctcaatttgcat 33721219  T
Q  95 ttctt 99  Q
    |||||    
T  33721218 ttctt 33721214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 392 - 445
Target Start/End: Complemental strand, 33735593 - 33735540
Alignment:
Q  392 ctcttctgggaagaaatcgcatcctaagcatcctgcaatgttgcattcctggca 445  Q
    |||||| |||||||||| ||||||||| |||||||| |||||||||||| ||||    
T  33735593 ctcttcagggaagaaattgcatcctaaacatcctgctatgttgcattcccggca 33735540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 529 - 577
Target Start/End: Complemental strand, 33720835 - 33720787
Alignment:
Q  529 cggtggaggtggagccggagacgacattggttaaggcagagacgatgac 577  Q
    ||||||||||||| |||||||| || ||||||| ||||| |||||||||    
T  33720835 cggtggaggtggaaccggagactacgttggttagggcagcgacgatgac 33720787  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 303 - 355
Target Start/End: Complemental strand, 6583102 - 6583050
Alignment:
Q  303 gggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctct 355  Q
    |||||||| |||||||| |||||||| ||||||||||||||||||||||||||    
T  6583102 gggtcacgtatttcagctgcccattttccccatggtctttgtctcactcctct 6583050  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 355
Target Start/End: Complemental strand, 6568943 - 6568891
Alignment:
Q  303 gggtcacgaatttcagcagcccatttaccccatggtctttgtctcactcctct 355  Q
    |||||||| |||||||| |||||||| ||||||||||| ||||||||||||||    
T  6568943 gggtcacgtatttcagctgcccattttccccatggtctctgtctcactcctct 6568891  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 358
Target Start/End: Complemental strand, 13409921 - 13409875
Alignment:
Q  312 atttcagcagcccatttaccccatggtctttgtctcactcctctgta 358  Q
    ||||| || |||||||| |||||||||||||||||||||||||||||    
T  13409921 atttctgctgcccattttccccatggtctttgtctcactcctctgta 13409875  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 367
Target Start/End: Original strand, 44331866 - 44331925
Alignment:
Q  309 cgaatttcagcagcccatttaccccatggtctttgtctcactcctctgta-cttcttctt 367  Q
    |||||||| || |||||||| ||||||||||| ||||| ||||||||||| |||||||||    
T  44331866 cgaatttctgctgcccattttccccatggtctctgtcttactcctctgtatcttcttctt 44331925  T

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