View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14326_low_2 (Length: 424)
Name: NF14326_low_2
Description: NF14326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14326_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 13 - 392
Target Start/End: Complemental strand, 16976579 - 16976200
Alignment:
| Q |
13 |
agaaaatgatggagaacaacaaaagggactatgaaggtatatctaacacccctactgagaagaaggaatatactgataacaatggtttcaatcaaagcgt |
112 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| |||| | ||||| |||||||||||||| || ||||||| ||||||| ||||||||||| |
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| T |
16976579 |
agaaaatgatggagaacaacgaaagggactatgaaggtatagctaatatccctattgagaagaaggaatctattgataaccatggtttgaatcaaagcgt |
16976480 |
T |
|
| Q |
113 |
caaaagcccacattttatgccaaaggagttgcgttcacttgaactccttgctcaatgctattgggaaagaaagaataccatgaacaaagattcaattgtg |
212 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16976479 |
caaaaacccacattttatgccaaaggagttgcgttcactcgaactccttgctcaatgctattgggaaagaaagaataccatgaacaaagattcaattgtg |
16976380 |
T |
|
| Q |
213 |
ctggaggtcaatgaggattgcgttgatcggcaagatacacagccaccaccagtttctgtgcacacacctcataaacggctatgcagcctcaaaaacacag |
312 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||| ||||||||||| | | |
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| T |
16976379 |
atggaggtcaatgaagattgcgttgatcggcaagatacacagccaccaccagtttctgtggacacacctcatgaacggatatggagcctcaaaaaggcgg |
16976280 |
T |
|
| Q |
313 |
aaaacgttcaatagactaagggggaggatgagaaggaagtgatatgggataattcgtaaacagcccttagagagtcagaa |
392 |
Q |
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|||| ||| || ||||||||| |||||| ||||| ||||||||||||||| | | | |||||||||||||||| |||||| |
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| T |
16976279 |
aaaaagttgaaaagactaaggaggaggaagagaatgaagtgatatgggatgaattggaaacagcccttagagaatcagaa |
16976200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 70 - 362
Target Start/End: Complemental strand, 16967716 - 16967424
Alignment:
| Q |
70 |
agaagaaggaatatactgataacaatggtttcaatcaaagcgtcaaaagcccacattttatgccaaaggagttgcgttcacttgaactccttgctcaatg |
169 |
Q |
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| T |
16967716 |
agaagaaggaatctattgataacagttgtttgaatcaaagcgtcaaaagcccacattttacgccaaaggagttgcgttcactcgaactccttgctcaatg |
16967617 |
T |
|
| Q |
170 |
ctattgggaaagaaagaataccatgaacaaagattcaattgtgctggaggtcaatgaggattgcgttgatcggcaagatacacagccaccaccagtttct |
269 |
Q |
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| T |
16967616 |
ctattgggaaagaaagaataccatgaacaaagattcaattgtgttggaggtcaatgaagattgcgttgatcggcaagatacacagccaccaccagtttct |
16967517 |
T |
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| Q |
270 |
gtgcacacacctcataaacggctatgcagcctcaaaaacacagaaaacgttcaatagactaagggggaggatgagaaggaagtgatatgggat |
362 |
Q |
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| T |
16967516 |
gtggacacacctcatgaacggatatggagcctcaaaaaggtggaaaaagttcagaagactaaggaggaggaagagaatgaagtgttatgggat |
16967424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 68 - 307
Target Start/End: Complemental strand, 16991859 - 16991620
Alignment:
| Q |
68 |
tgagaagaaggaatatactgataacaatggtttcaatcaaagcgtcaaaagcccacattttatgccaaaggagttgcgttcacttgaactccttgctcaa |
167 |
Q |
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|||||||||||||| |||||||||||||| || |||||||||||||||||| ||||||||| || |||||||| |||||||| |||||||||| | || |
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| T |
16991859 |
tgagaagaaggaatcaactgataacaatggattgaatcaaagcgtcaaaagcacacattttacgcgcaaggagttacgttcactcgaactccttgttaaa |
16991760 |
T |
|
| Q |
168 |
tgctattgggaaagaaagaataccatgaacaaagattcaattgtgctggaggtcaatgaggattgcgttgatcggcaagatacacagccaccaccagttt |
267 |
Q |
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||||||||||||||||||||| ||||||||| |||||||||||| | |||||||| || ||| | ||||||| ||| |||||| |||||||||||| | |
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| T |
16991759 |
tgctattgggaaagaaagaatttcatgaacaatgattcaattgtgttagaggtcaacgacgatggtgttgatcagcatcatacacggccaccaccagtct |
16991660 |
T |
|
| Q |
268 |
ctgtgcacacacctcataaacggctatgcagcctcaaaaa |
307 |
Q |
| |
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||||| | ||||||| | ||||| |||| ||||| ||||| |
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| T |
16991659 |
ctgtggagacacctcgtgaacggatatggagccttaaaaa |
16991620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 13 - 162
Target Start/End: Complemental strand, 17007429 - 17007274
Alignment:
| Q |
13 |
agaaaatgatggagaacaacaaaagggactatgaaggtatatctaacacccctactg------agaagaaggaatatactgataacaatggtttcaatca |
106 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||| |||||| ||||| || |||||||||||| || ||||||||||||||| ||||| |
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| T |
17007429 |
agaaaatgatggagaacaaaggaagggactataaaggtatagctaacatccctattgtgaagaagaagaaggaatctattgataacaatggtttgaatca |
17007330 |
T |
|
| Q |
107 |
aagcgtcaaaagcccacattttatgccaaaggagttgcgttcacttgaactccttg |
162 |
Q |
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|||| |||||||| ||| ||||||||| ||||||||| ||| ||||||||| |||| |
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| T |
17007329 |
aagcttcaaaagctcactttttatgccgaaggagttgggtttacttgaactgcttg |
17007274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 272
Target Start/End: Original strand, 10602286 - 10602536
Alignment:
| Q |
13 |
agaaaatgatggagaacaacaaaagggactatgaaggtatatctaacacccctactgagaagaag---gaatatactgataacaatggtttcaatcaaag |
109 |
Q |
| |
|
|||||||| |||||||||| |||||| ||| |||||||| |||||| || || ||||||||| |||| || |||||| |||||||| | ||||| |
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| T |
10602286 |
agaaaatggtggagaacaaaggaagggattataaaggtatagctaacatccatatcgagaagaagaatgaatctattgataataatggtttgatacaaag |
10602385 |
T |
|
| Q |
110 |
cgtcaaaagcccacattttatgccaaaggagttgcgttcacttgaactccttgctcaatgctattgggaaagaaagaataccatgaacaaagattcaatt |
209 |
Q |
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|||||||||| ||||||||||| || ||||||| |||||||| ||||||||||||| || | |||||||||||| || ||||||| | |
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| T |
10602386 |
cgtcaaaagcacacattttatgtggaatgagttgc------------tccttgctaaatgctattgggacagtatgaataccatgaagaatgattcaact |
10602473 |
T |
|
| Q |
210 |
gtgctggaggtcaatgaggattgcgttgatcggcaagatacacagccaccaccagtttctgtg |
272 |
Q |
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|| | ||| | | |||||| |||||||||| |||||||||||||||| ||| ||||||||| |
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| T |
10602474 |
ttgttcgagtttgaggaggatggcgttgatcgacaagatacacagccacaaccggtttctgtg |
10602536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 16976657 - 16976589
Alignment:
| Q |
13 |
agaaaatgatggagaacaacaaaagggactatgaaggtatatctaacacccctactgagaagaaggaat |
81 |
Q |
| |
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||||||| ||||||||||| |||||||||| |||||||| |||||| ||||| ||||||||| |||| |
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| T |
16976657 |
agaaaataatggagaacaaaggaagggactataaaggtataactaacatccctattgagaagaacgaat |
16976589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 68 - 307
Target Start/End: Original strand, 35263519 - 35263758
Alignment:
| Q |
68 |
tgagaagaaggaatatactgataacaatggtttcaatcaaagcgtcaaaagcccacattttatgccaaaggagttgcgttcacttgaactccttgctcaa |
167 |
Q |
| |
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|||||||||||||| || ||||| ||||||||| |||||||||||||||||| ||||||||| || ||||||||||||||||| |||||||||| | || |
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| T |
35263519 |
tgagaagaaggaatctattgataccaatggtttgaatcaaagcgtcaaaagcacacattttacgcggaaggagttgcgttcactcgaactccttgttaaa |
35263618 |
T |
|
| Q |
168 |
tgctattgggaaagaaagaataccatgaacaaagattcaattgtgctggaggtcaatgaggattgcgttgatcggcaagatacacagccaccaccagttt |
267 |
Q |
| |
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|||||||||||||||||||||||||| ||||| |||||||||||| | |||| || || ||| | |||| || |||||||||| |||||||||||| | |
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|
| T |
35263619 |
tgctattgggaaagaaagaataccattaacaatgattcaattgtgttagaggataacgacgatggtgttggtcagcaagatacatggccaccaccagtct |
35263718 |
T |
|
| Q |
268 |
ctgtgcacacacctcataaacggctatgcagcctcaaaaa |
307 |
Q |
| |
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||||| | ||||||| | ||||| |||| ||||| ||||| |
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|
| T |
35263719 |
ctgtggagacacctcgtgaacggatatggagccttaaaaa |
35263758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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