View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14326_low_3 (Length: 368)
Name: NF14326_low_3
Description: NF14326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14326_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 13 - 348
Target Start/End: Original strand, 8946141 - 8946476
Alignment:
| Q |
13 |
ttattcttgatgtacgatttggtgatttctccatctattggactgataaagatgtttgcataacttaagtcttgaaaactatactcttcttttctaaaga |
112 |
Q |
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| T |
8946141 |
ttattcttgatgtatgatttggtgatttctccatctattggactaataaagatgtttgcataacttaagtcttgaaaactatactcttcttttctaaaga |
8946240 |
T |
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| Q |
113 |
agtcgaaatttgatatatttgatatgaaaacagctccaacaacgtttgctcgatacacattagtatattgttcaataatatctccatcgtcacaaaccac |
212 |
Q |
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| T |
8946241 |
aatcaaaatttgatatatttgatatgaaaacagctccaacaacgtttgcttgatacacataagaatattgttcaataatatctccatcgtcacaaaccac |
8946340 |
T |
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| Q |
213 |
aatattgttcttcactttgattaattctgtaacattgtcgcacaaactcatgaaaacaattggcaaattgctagcagagaaatttcctagataattagac |
312 |
Q |
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| T |
8946341 |
aatattgttcttcactttgattaattctgtaacattgtcgcacaaacccatgaaaacaattggcaaattgctagcagagaaatttcctagataattagac |
8946440 |
T |
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| Q |
313 |
caacctgtgagtgagactccattaccaagtgtaaga |
348 |
Q |
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| T |
8946441 |
caacctgtgagtgagactccattaccaagtgtaaga |
8946476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 223 - 350
Target Start/End: Complemental strand, 8974135 - 8974008
Alignment:
| Q |
223 |
ttcactttgattaattctgtaacattgtcgcacaaactcatgaaaacaattggcaaattgctagcagagaaatttcctagataattagaccaacctgtga |
322 |
Q |
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| T |
8974135 |
ttcactttgattagttgtgtaatattgtcacacttacccatgaaaacaattggaatattactagcagagaagtttcctagataaaaagataagccagaga |
8974036 |
T |
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| Q |
323 |
gtgagactccattaccaagtgtaagatt |
350 |
Q |
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| T |
8974035 |
gtgagactccattaccaagtgtaagatt |
8974008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 202 - 350
Target Start/End: Complemental strand, 8962760 - 8962612
Alignment:
| Q |
202 |
tcacaaaccacaatattgttcttcactttgattaattctgtaacattgtcgcacaaactcatgaaaacaattggcaaattgctagcagagaaatttccta |
301 |
Q |
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| T |
8962760 |
tcacaaaccacaatctcgctcttcactctgattagttctgtaaaattgtcacacatacctttgaaaacaatgggaatattactagcagagaagtttccta |
8962661 |
T |
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| Q |
302 |
gataattagaccaacctgtgagtgagactccattaccaagtgtaagatt |
350 |
Q |
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| T |
8962660 |
tataggaagagaagccggtgagtgagactccattaccaagtgtaagatt |
8962612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 297
Target Start/End: Original strand, 9949680 - 9949775
Alignment:
| Q |
202 |
tcacaaaccacaatattgttcttcactttgattaattctgtaacattgtcgcacaaactcatgaaaacaattggcaaattgctagcagagaaattt |
297 |
Q |
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| T |
9949680 |
tcacaaatcacaatttttctattcacattgtttaattctttaacattgtcacacatactcatgaaaacaattgaaaaatcgttagcagataaattt |
9949775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 202 - 346
Target Start/End: Original strand, 21687478 - 21687622
Alignment:
| Q |
202 |
tcacaaaccacaatattgttcttcactttgattaattctgtaacattgtcgcacaaactcatgaaaacaattggcaaattgctagcagagaaatttccta |
301 |
Q |
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| T |
21687478 |
tcacaaaccacaatctttctcttcactgtgtttaattctttaacattgtcacacatacccataaaaacaattggaaaattgttagcagagaagtttccta |
21687577 |
T |
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| Q |
302 |
gataattagaccaacctgtgagtgagactccattaccaagtgtaa |
346 |
Q |
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|||| |||| |||| |||||||||||||||||||||||||||| |
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| T |
21687578 |
gatagaaagacaaaccagtgagtgagactccattaccaagtgtaa |
21687622 |
T |
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