View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14327_high_1 (Length: 861)
Name: NF14327_high_1
Description: NF14327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14327_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 380; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 230 - 609
Target Start/End: Complemental strand, 2246401 - 2246022
Alignment:
| Q |
230 |
cttcatttacactacctagataatgcaaggaaaacgttataattttgttattattttccctaaacagcaagaacttcccaaatcaattcaggatcaaaag |
329 |
Q |
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| T |
2246401 |
cttcatttacactacctagataatgcaaggaaaacgttataattttgttattattttccctaaacagcaagaacttcccaaatcaattcaggatcaaaag |
2246302 |
T |
|
| Q |
330 |
atggcattcttgctaaggagcaatcttcaaactctgtttcctctgtcaccattgtcgaaaccgaattcggagaattctcccctttccaaattccatcctc |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2246301 |
atggcattcttgctaaggagcaatcttcaaactctgtttcctctgtcaccattgtcgaaaccgaattcggagaattctcccctttccaaattccatcctc |
2246202 |
T |
|
| Q |
430 |
agaaacagttggtgaaaacaattcattcacccaatcatcacaaaaaacaagtggtgaaagcggtaacgaagacgaagaagaagaacaagaagatgagtta |
529 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2246201 |
agaaacagttggtgaaaacaattcattcacccaatcatcacaaaaaacaagtggtgaaagcggtaacgaagacgaagaagaagaacaagaagatgagtta |
2246102 |
T |
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| Q |
530 |
ataatcttgtctgaatttttatcactctttgtatcatgattattactacctgaattcttcttcatcttctttgcagcaat |
609 |
Q |
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| T |
2246101 |
ataatcttgtctgaatttttatcactctttgtatcatgattattactacctgaattcttcttcatcttctttgcagcaat |
2246022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 639 - 847
Target Start/End: Complemental strand, 2245992 - 2245784
Alignment:
| Q |
639 |
gacaaatagcttgaattttagcatcaacagaattcttcaaagcattcaatctagtagaatctccgaaacccaacttagttggatctttcaaatttggaaa |
738 |
Q |
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| T |
2245992 |
gacaaatagcttgaattttagcatcaacagaattcttcaaagcattcaatctagtagaatctccaaaacccaacttagttggatctttcaaatttggaaa |
2245893 |
T |
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| Q |
739 |
atttaaacgcgcgtattcgcctcgaagcttataagctgcacgatcataagcataagctgcagcttcagcagtttcataagttccaagccaaactctcatt |
838 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2245892 |
atttaaacgcgcgtattcgcctcgaagcttataagctgcacgatcataagcataagctgcagcttcagcagtttcataagttccaagccaaactctcatt |
2245793 |
T |
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| Q |
839 |
ctattctga |
847 |
Q |
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||||||||| |
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| T |
2245792 |
ctattctga |
2245784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 2246613 - 2246472
Alignment:
| Q |
18 |
caagatagatagtataacannnnnnncatcacaacaactgccataggaaaaatatcctgaagcttttgagtaaaaaggcaaagccgaaatgacagccaaa |
117 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2246613 |
caagatagatagtataacatttttttcatcacaacaactgccataggaaaaatatcctgaagcttttgagtaaaaagacaaagccgaaatgacagccaaa |
2246514 |
T |
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| Q |
118 |
acaatcctacattcaaaatgctaaagaaccccctcacttact |
159 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
2246513 |
acaatcctacattcaaaatgctaaagaaccccctcacttact |
2246472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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