View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14327_high_13 (Length: 359)
Name: NF14327_high_13
Description: NF14327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14327_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 19 - 340
Target Start/End: Original strand, 39553497 - 39553818
Alignment:
| Q |
19 |
ctaatctaccaccatagggaatcgaaagcacattcccaaaatatgaattcataagctcttctttgtttttgtcaccgttgcttagcctctttcttccgtc |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39553497 |
ctaatctaccaccatagggaatcgaaagcacattcccaaaatatgaattcataagctcttctttgtttttgtcaccgttgcttagcctctttcttccgtc |
39553596 |
T |
|
| Q |
119 |
aaccacaagccccatttttgcaacaatattttcattattgattgaagccgcttcggcaaccattttccacaagaaagcagaaaaggactcgagttttgag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39553597 |
aaccacaagccccatttttgcaacaatattttcattattgattgaagccgcttcggcaaccattttccacaagaaagcagaaaaggactcgagttttgag |
39553696 |
T |
|
| Q |
219 |
cgcttggaactaccaccattattgtttgagttggctagtgactgcattttgttgagttccttgcttgttacatagtatatgcgacttattatcgggtcgg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
39553697 |
cgcttggaactaccaccattattgtttgagttggctagtgactgcatgttgttgagttctttgcttgttacatagtatatgcgacttattattgggtcgg |
39553796 |
T |
|
| Q |
319 |
ttttaatatcagattcaggttc |
340 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
39553797 |
ttttaatatcagattcaggttc |
39553818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 335
Target Start/End: Original strand, 39543478 - 39543794
Alignment:
| Q |
19 |
ctaatctaccaccatagggaatcgaaagcacattcccaaaatatgaattcataagctcttctttgtttttgtcaccgttgcttagcctctttcttccgtc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39543478 |
ctaatctaccaccatagggaatcgaaagcacattcccaaaatatgaattcataagctcttctttgtttttgtcaccgttgcttagcctctttcttccgtc |
39543577 |
T |
|
| Q |
119 |
aaccacaagccccatttttgcaacaatattttcattattgattgaagccgcttcggcaaccattttccacaagaaagcagaaaaggactcgagttttgag |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39543578 |
aaccacaagccccatttttgcaacaatattttcattattgattgaagccgcttcggcaaccattttccacaagaaagcagaaaaggactcgagttttgag |
39543677 |
T |
|
| Q |
219 |
cgcttggaactaccaccattattgtttgagttggctagtgactgcattttgttgagttccttgcttgttacatagtatatgcgacttattatcgggtcgg |
318 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| ||||| | |
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| T |
39543678 |
cgtttggaactaccaccattattgtttgagttggcaagtgactgcatgttgttgagttctttgcttgttacataatatatgcgacttattattgggtcag |
39543777 |
T |
|
| Q |
319 |
ttttaatatcagattca |
335 |
Q |
| |
|
|||| |||||||||| |
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|
| T |
39543778 |
ttttttgatcagattca |
39543794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 20 - 328
Target Start/End: Original strand, 39586605 - 39586910
Alignment:
| Q |
20 |
taatctaccaccatagggaatcgaaagcacattcccaaaatatgaattcataagctcttctttgtttttgtcaccgttgcttagcctctttcttccgtca |
119 |
Q |
| |
|
|||||||| || ||||||| | |||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39586605 |
taatctacaactatagggagttgaaagcacattcccaaaatacgaactcataaactcttctttgtttttgtcaccgttgcttaatctctttcttccgtca |
39586704 |
T |
|
| Q |
120 |
accacaagccccatttttgcaacaatattttcattattgattgaagccgcttcggcaaccattttccacaagaaagcagaaaaggactcgagttttgagc |
219 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||| ||||| ||||||| ||| ||||||||||||||||||||||||||||| || || |||||||||| |
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|
| T |
39586705 |
accacaatccccatttttgcaacaacattttcactattggttgaagcggctgatgcaaccattttccacaagaaagcagaaaacgattcaagttttgagc |
39586804 |
T |
|
| Q |
220 |
gcttggaactaccaccattattgtttgagttggctagtgactgcattttgttgagttccttgcttgttacatagtatatgcgacttattatcgggtcggt |
319 |
Q |
| |
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|||| || |||| |||| |||| |||||||||| ||||||| |||||||||| | ||||||||| ||||| ||||||||||||| |||| ||| |
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| T |
39586805 |
gcttaacgcttccac---tattatttgtgttggctagtaactgcatggtgttgagttcttcgcttgttacgtagtacatgcgacttattagtgggttggt |
39586901 |
T |
|
| Q |
320 |
tttaatatc |
328 |
Q |
| |
|
||||||||| |
|
|
| T |
39586902 |
tttaatatc |
39586910 |
T |
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