View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14327_high_16 (Length: 319)
Name: NF14327_high_16
Description: NF14327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14327_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 141; Significance: 6e-74; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 138 - 295
Target Start/End: Complemental strand, 929174 - 929021
Alignment:
| Q |
138 |
atgatgtgtttctccgttgcttgctagtcaggaggttatggtagaatttaagaagaagttgtactcaatttgtaatttcatttctattgttgttgaattt |
237 |
Q |
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| T |
929174 |
atgatgtgtttctccgttgct----agtcaggaggttatggtagaatttaagaagaagttgtactcaatttgtaatttcatttctattgttgttgaattt |
929079 |
T |
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| Q |
238 |
gtggatgttccattccagttcatcaactaattaaggattgactcaaaaatttagagac |
295 |
Q |
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| T |
929078 |
gtggatgttccattccagttcatcaactaattaaggattgactcaaaaatttagagac |
929021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 61 - 145
Target Start/End: Complemental strand, 929340 - 929256
Alignment:
| Q |
61 |
tcttattcggactttctttaatgtttcagaagaccgtctaagttcggctgttgtgcccgaatgtttggcttctctctatgatgtg |
145 |
Q |
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| T |
929340 |
tcttactcggactttctttaatgtttcagaagaccgtctaagttcggctgttgtgcccgaatgtttggcttctctctatgttgtg |
929256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 929427 - 929362
Alignment:
| Q |
1 |
tcatatcatacaaaaacttcacaaggtccttattgtgacttatttcatcgtcttactgtttcttat |
66 |
Q |
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| T |
929427 |
tcatatcatacaaaaacttcacaaggtcctaattgtgacttatttcatcgtcttactgttttttat |
929362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 1201523 - 1201614
Alignment:
| Q |
1 |
tcatatcatacaaaaacttcacaaggtccttattgtgacttatttcatcgtcttactgtt----tcttattcggactttctttaatgtttca |
88 |
Q |
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| T |
1201523 |
tcatatcatacaaaaacttcacgaggtcctgattgtgagttattgcattgtcttactgttttaatcttattcagattatctttaatgtttca |
1201614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 1201640 - 1201696
Alignment:
| Q |
89 |
gaagaccgtctaagttcggctgttgtgcccgaatgtttggcttctctctatgatgtg |
145 |
Q |
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| T |
1201640 |
gaagagcgtctaagttctgctgttgtgcccgaatgtttggcttctctccatgttgtg |
1201696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 237
Target Start/End: Original strand, 1215212 - 1215280
Alignment:
| Q |
169 |
gaggttatggtagaatttaagaagaagttgtactcaatttgtaatttcatttctattgttgttgaattt |
237 |
Q |
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| T |
1215212 |
gaggttatggaagaatttaaggagaagttgtcctcatttcataatttcaatcctcatgttgttgaattt |
1215280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 8188573 - 8188529
Alignment:
| Q |
101 |
agttcggctgttgtgcccgaatgtttggcttctctctatgatgtg |
145 |
Q |
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| T |
8188573 |
agttctgctgttgtgcccgattgtttggcttctctccatgttgtg |
8188529 |
T |
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