View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14327_high_19 (Length: 276)
Name: NF14327_high_19
Description: NF14327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14327_high_19 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 120 - 274
Target Start/End: Complemental strand, 31471642 - 31471488
Alignment:
| Q |
120 |
taaaaggaaattaagggttaagatttggagtaagaatataggcttgcttactcttgaagtaaatatatccatcttcatgattgattttcttcattatatt |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
31471642 |
taaaaggaaattaagggttaagatttggagtaagaatataggcttgcttactcttgaagtaaatatatccatcttcatgattgatttccttcaatatatt |
31471543 |
T |
|
| Q |
220 |
gattatttgcttatttatcgtttcatgatatatatttcgcattcatctcactcga |
274 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| | |||||| |
|
|
| T |
31471542 |
gattatttgcttatttatcgtttcataatatatatttcgcattcatttaactcga |
31471488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 153
Target Start/End: Complemental strand, 48551534 - 48551485
Alignment:
| Q |
104 |
attagaaccattagattaaaaggaaattaagggttaagatttggagtaag |
153 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
48551534 |
attagaaccgttagattaaaattaaattaagggttaagatttagagtaag |
48551485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 32141590 - 32141634
Alignment:
| Q |
109 |
aaccattagattaaaaggaaattaagggttaagatttggagtaag |
153 |
Q |
| |
|
|||||| |||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
32141590 |
aaccatcagattaaaagaaaattaatggttaagatttggagtaag |
32141634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 10950919 - 10950956
Alignment:
| Q |
116 |
agattaaaaggaaattaagggttaagatttggagtaag |
153 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
10950919 |
agattaaaagaaaattaatggttaagatttggagtaag |
10950956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 151
Target Start/End: Complemental strand, 42725987 - 42725942
Alignment:
| Q |
106 |
tagaaccattagattaaaaggaaattaagggttaagatttggagta |
151 |
Q |
| |
|
||||||| ||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
42725987 |
tagaaccgttagattaaaattaaattaagggttgagatttggagta |
42725942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University