View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14327_high_29 (Length: 211)

Name: NF14327_high_29
Description: NF14327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14327_high_29
NF14327_high_29
[»] chr3 (5 HSPs)
chr3 (1-195)||(8584297-8584491)
chr3 (1-86)||(34142968-34143053)
chr3 (21-73)||(27634221-27634273)
chr3 (21-73)||(34519038-34519090)
chr3 (137-184)||(8553283-8553330)
[»] chr8 (1 HSPs)
chr8 (1-90)||(30187806-30187895)
[»] chr4 (5 HSPs)
chr4 (1-73)||(15041688-15041760)
chr4 (1-73)||(15112664-15112736)
chr4 (1-73)||(15039959-15040031)
chr4 (1-73)||(15114393-15114465)
chr4 (5-63)||(16003507-16003565)
[»] chr7 (2 HSPs)
chr7 (1-62)||(10867992-10868053)
chr7 (1-62)||(10866275-10866336)
[»] chr6 (2 HSPs)
chr6 (5-86)||(34244714-34244795)
chr6 (4-72)||(30580043-30580111)


Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 8584491 - 8584297
Alignment:
Q  1 gtacatggttggtccttttatagacctcaattttcctaactacaagtaactaactatagttctctgtaactaatttttacccaactataagtctataact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8584491 gtacatggttggtccttttatagacctcaattttcctaactacaagtaactaactatagttctctgtaactaatttttacccaactataagtctataact 8584392  T
Q  101 accttaactaactctactaactattgttatctcaacattacattgacctaatcagctacattttggtgacctaaaagatcaacattcttttctgt 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8584391 accttaactaactctactaactattgttatctcaacattacattgacctaatcagctacattttggtgacctaaaagatcaacattcttttctgt 8584297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 34143053 - 34142968
Alignment:
Q  1 gtacatggttggtccttttatagacctcaattttcctaactacaagtaactaactatagttctctgtaactaatttttacccaact 86  Q
    |||||||||||||||||||||||| |||||||  |||||||||  |||||||||||||| ||||| |||||||  |||| ||||||    
T  34143053 gtacatggttggtccttttatagaactcaattaccctaactacttgtaactaactatagctctctctaactaacatttaaccaact 34142968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 27634221 - 27634273
Alignment:
Q  21 tagacctcaattttcctaactacaagtaactaactatagttctctgtaactaa 73  Q
    ||||||||||||  |||||||||  |||||||||||||||||||| |||||||    
T  27634221 tagacctcaattaccctaactacttgtaactaactatagttctctctaactaa 27634273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 34519038 - 34519090
Alignment:
Q  21 tagacctcaattttcctaactacaagtaactaactatagttctctgtaactaa 73  Q
    ||||||||||||  |||||||||  |||||||||||||||||||| |||||||    
T  34519038 tagacctcaattaccctaactacttgtaactaactatagttctctctaactaa 34519090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 184
Target Start/End: Original strand, 8553283 - 8553330
Alignment:
Q  137 attacattgacctaatcagctacattttggtgacctaaaagatcaaca 184  Q
    |||||||||||| ||||| ||||||  |||||||||||||||||||||    
T  8553283 attacattgacccaatcaactacatgatggtgacctaaaagatcaaca 8553330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 30187806 - 30187895
Alignment:
Q  1 gtacatggttggtccttttatagacctcaattttcctaactacaagtaactaactatagttctctgtaactaatttttacccaactataa 90  Q
    ||||||| ||||||||||||||||||||||||| | |||||||| |||||||| ||||||||||||||||||||||||| ||||||||||    
T  30187806 gtacatgattggtccttttatagacctcaatttccttaactacatgtaactaattatagttctctgtaactaatttttaaccaactataa 30187895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 15041688 - 15041760
Alignment:
Q  1 gtacatggttggtccttttatagacctcaattttcctaactacaagtaactaactatagttctctgtaactaa 73  Q
    |||||||||||||||||||||||||||||||   |||||||||  |||||||||||||||||||| |||||||    
T  15041688 gtacatggttggtccttttatagacctcaatgaccctaactacttgtaactaactatagttctctctaactaa 15041760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 15112736 - 15112664
Alignment:
Q  1 gtacatggttggtccttttatagacctcaattttcctaactacaagtaactaactatagttctctgtaactaa 73  Q
    |||||||||||||||||||||||||||||||   |||||||||  |||||||||||||||||||| |||||||    
T  15112736 gtacatggttggtccttttatagacctcaatgaccctaactacttgtaactaactatagttctctctaactaa 15112664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 15039959 - 15040031
Alignment:
Q  1 gtacatggttggtccttttatagacctcaattttcctaactacaagtaactaactatagttctctgtaactaa 73  Q
    |||||||||||||||||||||||||||||||   |||||||||  |||||||||||| ||||||| |||||||    
T  15039959 gtacatggttggtccttttatagacctcaatgaccctaactacttgtaactaactattgttctctctaactaa 15040031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 15114465 - 15114393
Alignment:
Q  1 gtacatggttggtccttttatagacctcaattttcctaactacaagtaactaactatagttctctgtaactaa 73  Q
    |||||||||||||||||||||||||||||||   |||||||||  |||||||||||| ||||||| |||||||    
T  15114465 gtacatggttggtccttttatagacctcaatgaccctaactacttgtaactaactattgttctctctaactaa 15114393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 16003565 - 16003507
Alignment:
Q  5 atggttggtccttttatagacctcaattttcctaactacaagtaactaactatagttct 63  Q
    ||||||||||||||||||||||||||||  |||||||||  ||||||||||||||||||    
T  16003565 atggttggtccttttatagacctcaattaccctaactacttgtaactaactatagttct 16003507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 10868053 - 10867992
Alignment:
Q  1 gtacatggttggtccttttatagacctcaattttcctaactacaagtaactaactatagttc 62  Q
    ||||||||||||||||||||||||||||||||  ||||||||   |||||||||||||||||    
T  10868053 gtacatggttggtccttttatagacctcaattaccctaactagttgtaactaactatagttc 10867992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 10866336 - 10866275
Alignment:
Q  1 gtacatggttggtccttttatagacctcaattttcctaactacaagtaactaactatagttc 62  Q
    |||||||||||||||||||||| | |||||||  ||||||||   |||||||||||||||||    
T  10866336 gtacatggttggtccttttataaatctcaattaccctaactagttgtaactaactatagttc 10866275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 34244795 - 34244714
Alignment:
Q  5 atggttggtccttttatagacctcaattttcctaactacaagtaactaactatagttctctgtaactaatttttacccaact 86  Q
    |||||||||||||||||||||||||||   | |||||||  |||||||||||||||||||| |||||||  |||| ||||||    
T  34244795 atggttggtccttttatagacctcaatgaccttaactacttgtaactaactatagttctctctaactaacatttaaccaact 34244714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 30580043 - 30580111
Alignment:
Q  4 catggttggtccttttatagacctcaattttcctaactacaagtaactaactatagttctctgtaacta 72  Q
    |||||||| || | |||||||||||||||  |||||||||  |||||||||||||||||||| ||||||    
T  30580043 catggttgatcatattatagacctcaattaccctaactacttgtaactaactatagttctctctaacta 30580111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University