View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14327_low_11 (Length: 385)
Name: NF14327_low_11
Description: NF14327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14327_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 49203263 - 49202892
Alignment:
| Q |
1 |
cgtgttgaactaaaactaaaaaatttcaagtttgcatatggtggtgcctaacagacagatgactggcaacttgataggcacgacaaaatgaaaaattaac |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
49203263 |
cgtgttgaactaaaactaaaaaattttaagtttgcatatggtggtgcctaacagacagatgactggcaacttgataggcacgaaaaaatgaaaaattaac |
49203164 |
T |
|
| Q |
101 |
tatgttattcatattatactgcaatgtatgtccacagaaaatggccactgtttcttcataatccaagtaacttgtgagagagagattcatgataaaaact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49203163 |
tatgttattcatattatactgcaatgtatgtccacagaaaatggccactgtttcttcataatccaagtaacttgtgagagagagattcatgataaaaact |
49203064 |
T |
|
| Q |
201 |
ttgaaggaaagtagctcactcttagaggtggaggtatgttttcaattccactgggcaccctatcttttagcacattaatttggttggacggatcctgttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49203063 |
ttgaaggaaagtagctcactcttagaggtggaggtatgttttcaattccactgggcaccctatcttttagcacattaatttggttggacggatcctgttt |
49202964 |
T |
|
| Q |
301 |
gatatcaccatttactggtagcaaaactggtgaagatggtgggctgatgaggactaccttcagtttcttctc |
372 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49202963 |
gatatcaccatttactggtagcaaaactggtgaagatggtgggctgatgaggactaccttcagtttcttctc |
49202892 |
T |
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