View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14327_low_12 (Length: 375)
Name: NF14327_low_12
Description: NF14327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14327_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 47542181 - 47542533
Alignment:
| Q |
1 |
ttaagaatgcacctgtcaaaaaacaaacttaagaatgcaacatggtgggagttgagtaagtcacacacaaagttaattaactggcttcctctaatcttca |
100 |
Q |
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| T |
47542181 |
ttaagaatgcacctgtcaaaaaacaaacttaagaatgcaacatggtgggagttgagtaagtcacacacaaagttaattaactggcttcatctaat----a |
47542276 |
T |
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| Q |
101 |
acgcttgatcgattnnnnnnntataattaaagggttaaaggaaaaggtacttgtgggagaaaaacaatgctttgtgagaaagacattcgattccaatggt |
200 |
Q |
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| T |
47542277 |
acgcttgatcgattaaaaaaatataattaaagggttaaaggaaaaggtacttgtgggagaaaaacaatgctttgtgagaaagacattcgattccaatggt |
47542376 |
T |
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| Q |
201 |
cgcaagggtttaacaaaagttgataatgtctatgtttctgttttactaattttcatttttaagaagaaaaaattggcatgcactctataaggtgtaaact |
300 |
Q |
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| T |
47542377 |
cgcaagggtttaacaaaagttgataatgtctgt-tttctgttttactaattttcatttttaagaagaaaaaattggcatacactctataaggtgtaaact |
47542475 |
T |
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| Q |
301 |
agttttgcactagtttctgacaagaagtcaatattttacttttatttttaacagaaat |
358 |
Q |
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| T |
47542476 |
agttttgcactagtttctgacaagaagtcaatattttacttttatttttaacagaaat |
47542533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 34 - 233
Target Start/End: Original strand, 47547783 - 47547975
Alignment:
| Q |
34 |
aatgcaacatggtgggagttgagtaagtcacacacaaagttaattaactggcttcctctaatcttcaacgcttgatcgattnnnnnnntataattaaagg |
133 |
Q |
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| T |
47547783 |
aatgcaacatggtgggagttgagtaagtcacacacaaagttaatttactggcttcctctaatcttcaacgcttgatcaattaaaaagttataattaaagg |
47547882 |
T |
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| Q |
134 |
gttaaaggaaaaggtacttgtgggagaaaaacaatgctttgtgagaaagacattcgattccaatggtcgcaagggtttaacaaaagttgataatgtctat |
233 |
Q |
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| T |
47547883 |
gttaaaggaaaagg----cgtgcgagaaaaatattgct---tgagaaagacattcgattctaatggccgcaaaggtttaacaaaagttgataatgtctat |
47547975 |
T |
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