View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14327_low_16 (Length: 327)
Name: NF14327_low_16
Description: NF14327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14327_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 42 - 192
Target Start/End: Original strand, 31737791 - 31737941
Alignment:
| Q |
42 |
ccccaaagttaatcgaataatttccttttatgccactgttacattcaacatttgttttcaaccaattagctgagaagtctattgtgtagaatgtgttggc |
141 |
Q |
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| T |
31737791 |
ccccaaagttaatcgaataatttccttttatgccattgttacattcaacatttgttttcaaccaattagctgagaagtctattgtgtagaatgtggtggc |
31737890 |
T |
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| Q |
142 |
tcaactaggcaaaccgaacagttattttcacggttcataattcatacatca |
192 |
Q |
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| T |
31737891 |
tcaaccaggcaagccgaacagttattttcacggttcataattcatacatca |
31737941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 107 - 192
Target Start/End: Original strand, 31707591 - 31707676
Alignment:
| Q |
107 |
ttagctgagaagtctattgtgtagaatgtgttggctcaactaggcaaaccgaacagttattttcacggttcataattcatacatca |
192 |
Q |
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| T |
31707591 |
ttagctgagaagtctattgtgtagaatgtggtggctcaactaggcaagctgaacagtcattttcacggttcataattcatgcatca |
31707676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 252 - 307
Target Start/End: Original strand, 31738001 - 31738056
Alignment:
| Q |
252 |
tcacgcatacttgcattgatgagagaaaaaagcttcaccaatcaacactcctattc |
307 |
Q |
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| T |
31738001 |
tcacgcatccttgcattgatgagagaaaaaagcttcaccaatcaacactcctattc |
31738056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 31707731 - 31707782
Alignment:
| Q |
252 |
tcacgcatacttgcattgatgaga-gaaaaaagcttcaccaatcaacactcc |
302 |
Q |
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| T |
31707731 |
tcacgcatacttgcattgatgagataaaaaaagcttcacaattcaacactcc |
31707782 |
T |
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