View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14327_low_17 (Length: 327)
Name: NF14327_low_17
Description: NF14327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14327_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 13 - 313
Target Start/End: Original strand, 9451657 - 9451957
Alignment:
| Q |
13 |
tcatcaactacttctaaagcagcttatttgtagcattcatgtaacactttctatgcaatatttcttccaaggccttaacggtgttctttaaatttcatat |
112 |
Q |
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| T |
9451657 |
tcatcaactacttctaaagcagctcatttgtagcattcatggaacactttctatgcaatatttcttccaaggccttaacggtgttctttaaatttcatat |
9451756 |
T |
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| Q |
113 |
tttggcctctgagaaaccattcacatcgtcgcttcactctcgacccttttcctatctcattgaataatttcatctgccgattccgttgccgacgctattc |
212 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||| ||| ||||||||||||| |||||| |
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| T |
9451757 |
tttggcctctgagaaaccattcacatcgtcgcttctctctcaacccttttcctatctcattgaaaaatttcatctaccgtttccgttgccgacactattc |
9451856 |
T |
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| Q |
213 |
tcaccaaggtcattaggaggtttgttcttctcaattcatgttattcttctaaggtaatagtgaagaattactttcttatcattgccttaatggtatatat |
312 |
Q |
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||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||| ||| |
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| T |
9451857 |
tcaccaaggtcgttaggcggtttgttcttctcaattcatgttattctcctaaggtaatagtgaagcattactttcttatcattgccttactggtatctat |
9451956 |
T |
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| Q |
313 |
t |
313 |
Q |
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| T |
9451957 |
t |
9451957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 235 - 313
Target Start/End: Complemental strand, 21547993 - 21547915
Alignment:
| Q |
235 |
tgttcttctcaattcatgttattcttctaaggtaatagtgaagaattactttcttatcattgccttaatggtatatatt |
313 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||| |
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| T |
21547993 |
tgttcttctcaatgcatgttattcttctaaggtaatagtgaagcattactttcttatcattgccttactggtatctatt |
21547915 |
T |
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