View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14327_low_18 (Length: 319)

Name: NF14327_low_18
Description: NF14327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14327_low_18
NF14327_low_18
[»] chr5 (6 HSPs)
chr5 (138-295)||(929021-929174)
chr5 (61-145)||(929256-929340)
chr5 (1-66)||(929362-929427)
chr5 (1-88)||(1201523-1201614)
chr5 (89-145)||(1201640-1201696)
chr5 (169-237)||(1215212-1215280)
[»] chr1 (1 HSPs)
chr1 (101-145)||(8188529-8188573)


Alignment Details
Target: chr5 (Bit Score: 141; Significance: 6e-74; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 138 - 295
Target Start/End: Complemental strand, 929174 - 929021
Alignment:
Q  138 atgatgtgtttctccgttgcttgctagtcaggaggttatggtagaatttaagaagaagttgtactcaatttgtaatttcatttctattgttgttgaattt 237  Q
    |||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  929174 atgatgtgtttctccgttgct----agtcaggaggttatggtagaatttaagaagaagttgtactcaatttgtaatttcatttctattgttgttgaattt 929079  T
Q  238 gtggatgttccattccagttcatcaactaattaaggattgactcaaaaatttagagac 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  929078 gtggatgttccattccagttcatcaactaattaaggattgactcaaaaatttagagac 929021  T

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Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 61 - 145
Target Start/End: Complemental strand, 929340 - 929256
Alignment:
Q  61 tcttattcggactttctttaatgtttcagaagaccgtctaagttcggctgttgtgcccgaatgtttggcttctctctatgatgtg 145  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  929340 tcttactcggactttctttaatgtttcagaagaccgtctaagttcggctgttgtgcccgaatgtttggcttctctctatgttgtg 929256  T

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Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 929427 - 929362
Alignment:
Q  1 tcatatcatacaaaaacttcacaaggtccttattgtgacttatttcatcgtcttactgtttcttat 66  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  929427 tcatatcatacaaaaacttcacaaggtcctaattgtgacttatttcatcgtcttactgttttttat 929362  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 1201523 - 1201614
Alignment:
Q  1 tcatatcatacaaaaacttcacaaggtccttattgtgacttatttcatcgtcttactgtt----tcttattcggactttctttaatgtttca 88  Q
    |||||||||||||||||||||| ||||||| ||||||| ||||| ||| |||||||||||    |||||||| || | ||||||||||||||    
T  1201523 tcatatcatacaaaaacttcacgaggtcctgattgtgagttattgcattgtcttactgttttaatcttattcagattatctttaatgtttca 1201614  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 1201640 - 1201696
Alignment:
Q  89 gaagaccgtctaagttcggctgttgtgcccgaatgtttggcttctctctatgatgtg 145  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||| ||| ||||    
T  1201640 gaagagcgtctaagttctgctgttgtgcccgaatgtttggcttctctccatgttgtg 1201696  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 237
Target Start/End: Original strand, 1215212 - 1215280
Alignment:
Q  169 gaggttatggtagaatttaagaagaagttgtactcaatttgtaatttcatttctattgttgttgaattt 237  Q
    |||||||||| |||||||||| ||||||||| |||| ||  |||||||| | ||  |||||||||||||    
T  1215212 gaggttatggaagaatttaaggagaagttgtcctcatttcataatttcaatcctcatgttgttgaattt 1215280  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 8188573 - 8188529
Alignment:
Q  101 agttcggctgttgtgcccgaatgtttggcttctctctatgatgtg 145  Q
    ||||| |||||||||||||| ||||||||||||||| ||| ||||    
T  8188573 agttctgctgttgtgcccgattgtttggcttctctccatgttgtg 8188529  T

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