View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14327_low_20 (Length: 297)
Name: NF14327_low_20
Description: NF14327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14327_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 98 - 239
Target Start/End: Original strand, 24745647 - 24745788
Alignment:
| Q |
98 |
actttaaacaagatacaaaacttgttagaatgaactcgtgtcacctgaagcagagcaagagtattgcatattcgagttgattgtgcaggagtaagatttt |
197 |
Q |
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| T |
24745647 |
actttaaacaagatacaaaactttttagaatgaactcgtctcacctgaagcagagcaagagtattgcatattcgagttgattgtgaaggagtaagatttt |
24745746 |
T |
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| Q |
198 |
ccggtgaaagagcaggatatattgtaattatttcctaaaagg |
239 |
Q |
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| T |
24745747 |
ccggtgaaagagcaggatatattgtaattatttcctaaaagg |
24745788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 24745254 - 24745289
Alignment:
| Q |
13 |
aaaatcatgagagaaagatattaatttttcgtatat |
48 |
Q |
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| T |
24745254 |
aaaagcatgagagaaagatattaatttttcgtatat |
24745289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 233
Target Start/End: Original strand, 40807087 - 40807153
Alignment:
| Q |
167 |
attcgagttgattgtgcaggagtaagattttccggtgaaagagcaggatatattgtaattatttcct |
233 |
Q |
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| T |
40807087 |
attcgagttgattgtgttggagtaagattctctgatgaaagagtaggatatattgaaattatttcct |
40807153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 193
Target Start/End: Original strand, 24128753 - 24128833
Alignment:
| Q |
113 |
caaaacttgttagaatgaactcgtgtcacctgaagcagagcaagagtattgcatattcgagttgattgtgcaggagtaaga |
193 |
Q |
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| T |
24128753 |
caaaacttgttagaataaactcatctcacctgaagtagtgcaagaacgttacacactcgagttgattgtgctagagtaaga |
24128833 |
T |
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