View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14327_low_22 (Length: 269)
Name: NF14327_low_22
Description: NF14327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14327_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 14 - 131
Target Start/End: Original strand, 46232147 - 46232264
Alignment:
| Q |
14 |
caaatagttcaactattttaaagtataaaacattcattctaattgttcttagatcttatctttcttattttgaaaatattgaacgatgctcctatttttc |
113 |
Q |
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| T |
46232147 |
caaatagttcaactattttaaagtataaaacattcattctaattgttcttagatcttatctttcttattttgaaaatattgaacgatgctcctatttttc |
46232246 |
T |
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| Q |
114 |
aaaattatatacaaccat |
131 |
Q |
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| T |
46232247 |
aaaattatatacaaccat |
46232264 |
T |
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Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 165 - 256
Target Start/End: Original strand, 46232265 - 46232358
Alignment:
| Q |
165 |
gcgatttcataagttcttcaaaccattgagttgctgacgggg--acagatgttgttctatgtgtaggcctatgcccacacaaaattttagaaac |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
46232265 |
gcgatttcataagttcttcaaaccattgagttgctgacggggggacagatgttgttctatgtgtaggtctatgcccacacaaaattttagaaac |
46232358 |
T |
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