View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14327_low_24 (Length: 244)
Name: NF14327_low_24
Description: NF14327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14327_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 38833518 - 38833740
Alignment:
| Q |
19 |
caatggtgggatcttccctgcaaacctcacagggta----aaaaactaatttaagaaagtgacattatagtgtaatttgttttacacggtgaatgtgtac |
114 |
Q |
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| T |
38833518 |
caatggtgggatcttccctgcaaacctcacagggtacgtaaaaaactaatttaagaaagtgacattatagtgtaatttgttttacacggtgaatgtgtac |
38833617 |
T |
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| Q |
115 |
aaattaattttgattgatacacgccactaaccaaaaattaaacttggcatttttagggtccagatggaaaaactttgtcaggaccatgtggaagtccagc |
214 |
Q |
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| T |
38833618 |
aaattaattttgattggtacacgccactaaccaaaaattaaacttggcatttttagggtccagatggaaaaactttgtcaggaccatgtggaagtccagc |
38833717 |
T |
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| Q |
215 |
tgtgagtaaaaccattcatctca |
237 |
Q |
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| T |
38833718 |
tgtgagtaaaaccattcagctca |
38833740 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 12318154 - 12318117
Alignment:
| Q |
18 |
acaatggtgggatcttccctgcaaacctcacagggtaa |
55 |
Q |
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| T |
12318154 |
acaatggtgggatcttccttgcaaacctcatagggtaa |
12318117 |
T |
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