View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14327_low_26 (Length: 233)

Name: NF14327_low_26
Description: NF14327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14327_low_26
NF14327_low_26
[»] chr3 (3 HSPs)
chr3 (14-147)||(34143008-34143141)
chr3 (14-90)||(548210-548286)
chr3 (98-144)||(8584449-8584495)
[»] scaffold0245 (2 HSPs)
scaffold0245 (14-90)||(11213-11289)
scaffold0245 (14-90)||(9591-9667)
[»] chr1 (3 HSPs)
chr1 (14-90)||(1284946-1285022)
chr1 (14-78)||(35891409-35891473)
chr1 (62-133)||(17309803-17309874)
[»] chr4 (10 HSPs)
chr4 (62-147)||(15041648-15041733)
chr4 (62-147)||(15112691-15112776)
chr4 (62-147)||(15039919-15040004)
chr4 (62-147)||(15114420-15114505)
chr4 (14-90)||(10032594-10032670)
chr4 (14-90)||(18812577-18812653)
chr4 (83-147)||(16003524-16003587)
chr4 (14-91)||(8678645-8678722)
chr4 (14-74)||(25843550-25843610)
chr4 (15-86)||(8818660-8818731)
[»] scaffold0229 (1 HSPs)
scaffold0229 (14-90)||(9919-9995)
[»] chr5 (1 HSPs)
chr5 (14-88)||(4897338-4897412)
[»] chr7 (3 HSPs)
chr7 (62-143)||(10868012-10868093)
chr7 (62-143)||(10866295-10866376)
chr7 (62-125)||(20186153-20186215)
[»] chr6 (5 HSPs)
chr6 (14-90)||(25050981-25051057)
chr6 (62-147)||(34244754-34244839)
chr6 (81-147)||(30580020-30580085)
chr6 (62-126)||(13214013-13214076)
chr6 (44-90)||(6232810-6232856)
[»] chr8 (1 HSPs)
chr8 (62-144)||(30187766-30187848)


Alignment Details
Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 14 - 147
Target Start/End: Complemental strand, 34143141 - 34143008
Alignment:
Q  14 cataggagatgtaggctttagaggtagaaacaaaggaataatccttgtaattcatattgaattagattgaaaaagattgcatgaatgagtacatggttgg 113  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34143141 cataggagaagtaggcattagaggtagaaacaaaggaataatccttgtaattcatattgaattagattgaaaaagattgcatgaatgagtacatggttgg 34143042  T
Q  114 tccttttatagaactcaattaccctaactacttg 147  Q
    ||||||||||||||||||||||||||||||||||    
T  34143041 tccttttatagaactcaattaccctaactacttg 34143008  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 548286 - 548210
Alignment:
Q  14 cataggagatgtaggctttagaggtagaaacaaaggaataatccttgtaattcatattgaattagattgaaaaagat 90  Q
    ||||||||| || | | |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  548286 cataggagaagtggacattagagatagaaacaaaggaataatccttgtaattcatattgaattagaatgaaaaagat 548210  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 8584495 - 8584449
Alignment:
Q  98 atgagtacatggttggtccttttatagaactcaattaccctaactac 144  Q
    |||||||||||||||||||||||||||| |||||||  |||||||||    
T  8584495 atgagtacatggttggtccttttatagacctcaattttcctaactac 8584449  T

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Target: scaffold0245 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 11289 - 11213
Alignment:
Q  14 cataggagatgtaggctttagaggtagaaacaaaggaataatccttgtaattcatattgaattagattgaaaaagat 90  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11289 cataggagaagtaggccttagaggtagaaacaaaggaataatccttgtaattcatattgaattagattgaaaaagat 11213  T

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Target: scaffold0245; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 9667 - 9591
Alignment:
Q  14 cataggagatgtaggctttagaggtagaaacaaaggaataatccttgtaattcatattgaattagattgaaaaagat 90  Q
    ||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9667 cataggagaagtaggccttagaggtagaaacagaggaataatccttgtaattcatattgaattagattgaaaaagat 9591  T

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Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 1285022 - 1284946
Alignment:
Q  14 cataggagatgtaggctttagaggtagaaacaaaggaataatccttgtaattcatattgaattagattgaaaaagat 90  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1285022 cataggagaagtaggccttagaggtagaaacaaaggaataatccttgtaattcatattgaattagattgaaaaagat 1284946  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 35891409 - 35891473
Alignment:
Q  14 cataggagatgtaggctttagaggtagaaacaaaggaataatccttgtaattcatattgaattag 78  Q
    ||||||||| |||| | | |||||| || ||||||||||||||||||| ||| ||||||||||||    
T  35891409 cataggagaagtagacatgagaggttgatacaaaggaataatccttgtcatttatattgaattag 35891473  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 133
Target Start/End: Original strand, 17309803 - 17309874
Alignment:
Q  62 aattcatattgaattagattgaaaaagattgcatgaatgagtacatggttggtcct-tttatagaactcaatt 133  Q
    |||||||||||||||  |||||||||||||  || ||||||||||||| ||||| | |||||||| |||||||    
T  17309803 aattcatattgaattgtattgaaaaagatt-aattaatgagtacatggatggtcttatttatagacctcaatt 17309874  T

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Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 62 - 147
Target Start/End: Original strand, 15041648 - 15041733
Alignment:
Q  62 aattcatattgaattagattgaaaaagattgcatgaatgagtacatggttggtccttttatagaactcaattaccctaactacttg 147  Q
    |||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  15041648 aattcatattgaattgtattgaaaaagattacatgaatgagtacatggttggtccttttatagacctcaatgaccctaactacttg 15041733  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 62 - 147
Target Start/End: Complemental strand, 15112776 - 15112691
Alignment:
Q  62 aattcatattgaattagattgaaaaagattgcatgaatgagtacatggttggtccttttatagaactcaattaccctaactacttg 147  Q
    |||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  15112776 aattcatattgaattgtattgaaaaagattacatgaatgagtacatggttggtccttttatagacctcaatgaccctaactacttg 15112691  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 62 - 147
Target Start/End: Original strand, 15039919 - 15040004
Alignment:
Q  62 aattcatattgaattagattgaaaaagattgcatgaatgagtacatggttggtccttttatagaactcaattaccctaactacttg 147  Q
    |||||||| ||||||  ||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  15039919 aattcatagtgaattgtattgaaaaagattacatgaatgagtacatggttggtccttttatagacctcaatgaccctaactacttg 15040004  T

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Target: chr4; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 62 - 147
Target Start/End: Complemental strand, 15114505 - 15114420
Alignment:
Q  62 aattcatattgaattagattgaaaaagattgcatgaatgagtacatggttggtccttttatagaactcaattaccctaactacttg 147  Q
    |||||||| ||||||  ||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  15114505 aattcatagtgaattgtattgaaaaagattacatgaatgagtacatggttggtccttttatagacctcaatgaccctaactacttg 15114420  T

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Target: chr4; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 10032594 - 10032670
Alignment:
Q  14 cataggagatgtaggctttagaggtagaaacaaaggaataatccttgtaattcatattgaattagattgaaaaagat 90  Q
    ||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  10032594 cataggagaagtaggcattagaggtagaaacaaaggaatagtccttgtaattcatattgaattagaatgaaaaagat 10032670  T

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Target: chr4; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 18812577 - 18812653
Alignment:
Q  14 cataggagatgtaggctttagaggtagaaacaaaggaataatccttgtaattcatattgaattagattgaaaaagat 90  Q
    ||||||||| |||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  18812577 cataggagaagtaggcatgagaggtagaaacaaaagaataatccttgtaattcatattgaattagattgaaaaagat 18812653  T

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Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 16003587 - 16003524
Alignment:
Q  83 aaaaagattgcatgaatgagtacatggttggtccttttatagaactcaattaccctaactacttg 147  Q
    |||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  16003587 aaaaagattg-atgaatgagtatatggttggtccttttatagacctcaattaccctaactacttg 16003524  T

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Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 91
Target Start/End: Complemental strand, 8678722 - 8678645
Alignment:
Q  14 cataggagatgtaggctttagaggtagaaacaaaggaataatccttgtaattcatattgaattagattgaaaaagatt 91  Q
    ||||||||| |||||||| | |||||||||  ||| |||||||||||||||||||||| ||||| | |||||| ||||    
T  8678722 cataggagaagtaggcttgataggtagaaaataagaaataatccttgtaattcatattcaattaaaatgaaaacgatt 8678645  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 25843610 - 25843550
Alignment:
Q  14 cataggagatgtaggctttagaggtagaaacaaaggaataatccttgtaattcatattgaa 74  Q
    ||||||||| ||| |||| | ||||||||||||||||||||||||| |  |||||||||||    
T  25843610 cataggagaggtaagcttgataggtagaaacaaaggaataatccttatgtttcatattgaa 25843550  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 8818660 - 8818731
Alignment:
Q  15 ataggagatgtaggctttagaggtagaaacaaaggaataatccttgtaattcatattgaattagattgaaaa 86  Q
    |||||||| |||||| | |||| | || ||||||||||||||||| | ||| |||||||||||||| |||||    
T  8818660 ataggagaagtaggcatgagagattgatacaaaggaataatccttatgatttatattgaattagatagaaaa 8818731  T

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Target: scaffold0229 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 9995 - 9919
Alignment:
Q  14 cataggagatgtaggctttagaggtagaaacaaaggaataatccttgtaattcatattgaattagattgaaaaagat 90  Q
    ||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9995 cataggagaagtaggccttagaggtagaaacagaggaataatccttgtaattcatattgaattagattgaaaaagat 9919  T

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Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 88
Target Start/End: Original strand, 4897338 - 4897412
Alignment:
Q  14 cataggagatgtaggctttagaggtagaaacaaaggaataatccttgtaattcatattgaattagattgaaaaag 88  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4897338 cataggagaagtaggcattagaggtagaaacaaaggaataatccttgtaattcatattgaattagaatgaaaaag 4897412  T

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Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 62 - 143
Target Start/End: Complemental strand, 10868093 - 10868012
Alignment:
Q  62 aattcatattgaattagattgaaaaagattgcatgaatgagtacatggttggtccttttatagaactcaattaccctaacta 143  Q
    |||||||||||||||  |||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10868093 aattcatattgaattgtattgaaaaagattatatgaatgagtacatggttggtccttttatagacctcaattaccctaacta 10868012  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 62 - 143
Target Start/End: Complemental strand, 10866376 - 10866295
Alignment:
Q  62 aattcatattgaattagattgaaaaagattgcatgaatgagtacatggttggtccttttatagaactcaattaccctaacta 143  Q
    |||||||||| ||||  ||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  10866376 aattcatattaaattgtattgaaaaagattacatgaatgagtacatggttggtccttttataaatctcaattaccctaacta 10866295  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 20186215 - 20186153
Alignment:
Q  62 aattcatattgaattagattgaaaaagattgcatgaatgagtacatggttggtccttttataga 125  Q
    |||||||||||||||  |||||||||||||  ||||||||||||||||||| ||||| ||||||    
T  20186215 aattcatattgaattgtattgaaaaagatta-atgaatgagtacatggttgatccttatataga 20186153  T

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Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 25051057 - 25050981
Alignment:
Q  14 cataggagatgtaggctttagaggtagaaacaaaggaataatccttgtaattcatattgaattagattgaaaaagat 90  Q
    ||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  25051057 cataggagaagtaggcattagaggtagaaacaaaggaataatctttgtaattcatattgaattaaattgaaaaagat 25050981  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 62 - 147
Target Start/End: Complemental strand, 34244839 - 34244754
Alignment:
Q  62 aattcatattgaattagattgaaaaagattgcatgaatgagtacatggttggtccttttatagaactcaattaccctaactacttg 147  Q
    |||||||  ||||||  |||||||||||||  ||||||||||| |||||||||||||||||||| |||||| ||| ||||||||||    
T  34244839 aattcattatgaattgtattgaaaaagattatatgaatgagtatatggttggtccttttatagacctcaatgaccttaactacttg 34244754  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 81 - 147
Target Start/End: Original strand, 30580020 - 30580085
Alignment:
Q  81 tgaaaaagattgcatgaatgagtacatggttggtccttttatagaactcaattaccctaactacttg 147  Q
    |||||||||||| |||||||||| |||||||| || | ||||||| |||||||||||||||||||||    
T  30580020 tgaaaaagattg-atgaatgagttcatggttgatcatattatagacctcaattaccctaactacttg 30580085  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 13214013 - 13214076
Alignment:
Q  62 aattcatattgaattagattgaaaaagattgcatgaatgagtacatggttggtccttttatagaa 126  Q
    |||||||  ||||||  ||| |||||||||| |||||| ||||||||||||||||||||||||||    
T  13214013 aattcattatgaattgtattaaaaaagattg-atgaataagtacatggttggtccttttatagaa 13214076  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 6232856 - 6232810
Alignment:
Q  44 caaaggaataatccttgtaattcatattgaattagattgaaaaagat 90  Q
    |||| |||||||||||||  |||||||||||||||||||| ||||||    
T  6232856 caaaagaataatccttgtgtttcatattgaattagattgataaagat 6232810  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 144
Target Start/End: Original strand, 30187766 - 30187848
Alignment:
Q  62 aattcatattgaattagattgaaaaagattgcatgaatgagtacatggttggtccttttatagaactcaattaccctaactac 144  Q
    |||||||  ||||||  ||||||||| ||| |||||||||||||||| |||||||||||||||| ||||||| || |||||||    
T  30187766 aattcattatgaattgtattgaaaaaaattacatgaatgagtacatgattggtccttttatagacctcaatttccttaactac 30187848  T

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