View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14327_low_27 (Length: 229)
Name: NF14327_low_27
Description: NF14327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14327_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 81 - 209
Target Start/End: Complemental strand, 31500237 - 31500109
Alignment:
| Q |
81 |
ccaatccatgttcctatgcctttatcttcttctaatgaatttagaccttatgacatgtatggggccatagtgatagttcaagaaggtcggttataataga |
180 |
Q |
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| T |
31500237 |
ccaatccatgttcctatgcctttatcttcttctaatgaatttagaccttatgacatgtatggggccatagtgatagttcaagaaggtcggttataataga |
31500138 |
T |
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| Q |
181 |
agctttgcattcaattcaatgttctacgt |
209 |
Q |
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| T |
31500137 |
agatttgcattcaattcaatgttctacgt |
31500109 |
T |
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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 195
Target Start/End: Complemental strand, 31507294 - 31507249
Alignment:
| Q |
150 |
gtgatagttcaagaaggtcggttataatagaagctttgcattcaat |
195 |
Q |
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| T |
31507294 |
gtgatatttcatcaaggtcggttataatggaagctttgcattcaat |
31507249 |
T |
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