View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14327_low_28 (Length: 229)

Name: NF14327_low_28
Description: NF14327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14327_low_28
NF14327_low_28
[»] chr8 (6 HSPs)
chr8 (1-217)||(2631703-2631919)
chr8 (116-215)||(43848110-43848212)
chr8 (94-208)||(26657646-26657759)
chr8 (93-182)||(21593187-21593276)
chr8 (123-215)||(29043139-29043234)
chr8 (98-162)||(16932553-16932617)
[»] scaffold1667 (1 HSPs)
scaffold1667 (116-182)||(711-777)
[»] scaffold0044 (1 HSPs)
scaffold0044 (116-182)||(20862-20928)
[»] chr7 (2 HSPs)
chr7 (123-215)||(38993112-38993207)
chr7 (119-177)||(2040089-2040147)
[»] scaffold0012 (1 HSPs)
scaffold0012 (116-216)||(103676-103776)
[»] chr6 (3 HSPs)
chr6 (100-175)||(24205471-24205546)
chr6 (116-214)||(14372194-14372292)
chr6 (93-214)||(12435927-12436047)
[»] scaffold0111 (1 HSPs)
scaffold0111 (110-182)||(41237-41309)
[»] chr5 (1 HSPs)
chr5 (131-215)||(34995472-34995555)
[»] chr2 (1 HSPs)
chr2 (141-209)||(36802298-36802366)


Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 2631919 - 2631703
Alignment:
Q  1 ggttcctttccatacctctaaaaatccctttaattttctttaaatcaattttctcttaccttaaagtttgtttggatggagtagnnnnnnnnataagcta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||    
T  2631919 ggttcctttccatacctctaaaaatccctttaattttctttaaatcaattttctcttaccttaaagtttgtttggatggagtagttttttttataagcta 2631820  T
Q  101 ggagagaatacatgtatcaagaggaagcaacgacattccgactaagttggcaccccgatgaatcttcatcctatgccaccaatatctataaaatttattt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2631819 ggagagaatacatgtatcaagaggaagcaacgacattccgactaggttggcaccccgatgaatcttcatcctatgccaccaatatctataaaatttattt 2631720  T
Q  201 aaaaaaggggaaaaatt 217  Q
    |||||||||||||||||    
T  2631719 aaaaaaggggaaaaatt 2631703  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 43848110 - 43848212
Alignment:
Q  116 atcaagaggaagcaacgacattccgactaagttggcaccccgatgaatcttcatcctatgccaccaatatc---tataaaatttatttaaaaaaggggaa 212  Q
    |||||| ||||||||| |||| || |||| ||||||||||||  ||| | |||||||||||| ||||| ||   || |||||||||| |||||| |||||    
T  43848110 atcaaggggaagcaacaacatcccaactaggttggcaccccgcagaaccctcatcctatgccgccaatctcagataaaaaatttattaaaaaaaagggaa 43848209  T
Q  213 aaa 215  Q
    |||    
T  43848210 aaa 43848212  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 208
Target Start/End: Complemental strand, 26657759 - 26657646
Alignment:
Q  94 taagctaggagagaatacatgtatcaagaggaagcaacgacattccgactaagttggcaccccgatgaatcttcatcctatgccaccaatatctataaaa 193  Q
    ||||| ||||||||  ||||| ||||||||||| || |||||| || |||||||||||||  ||   || || ||||||||||||||||  |||| ||||    
T  26657759 taagcaaggagagaggacatgcatcaagaggaaacaccgacatcccaactaagttggcacttcgggaaacctccatcctatgccaccaaactcta-aaaa 26657661  T
Q  194 tttatttaaaaaagg 208  Q
    || ||| ||||||||    
T  26657660 ttaattaaaaaaagg 26657646  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 182
Target Start/End: Complemental strand, 21593276 - 21593187
Alignment:
Q  93 ataagctaggagagaatacatgtatcaagaggaagcaacgacattccgactaagttggcaccccgatgaatcttcatcctatgccaccaa 182  Q
    |||||| ||||||||  ||| | ||||||||| | || ||||||||| |||| |||||||||||||   | |||||||||||||| ||||    
T  21593276 ataagcaaggagagaggacaggcatcaagaggcatcatcgacattccaactaggttggcaccccgagagaccttcatcctatgccgccaa 21593187  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 215
Target Start/End: Complemental strand, 29043234 - 29043139
Alignment:
Q  123 ggaagcaacgacattccgactaagttggcaccccgatgaatcttcatcctatgccaccaatatc---tataaaatttatttaaaaaaggggaaaaa 215  Q
    |||||||||||||| |  |||| |||||||||||   |||||  ||||||||||||||||| ||   || |||||||||| |||||| ||||||||    
T  29043234 ggaagcaacgacatccaaactaggttggcaccccacagaatccacatcctatgccaccaatctcagataaaaaatttattaaaaaaaagggaaaaa 29043139  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 162
Target Start/End: Original strand, 16932553 - 16932617
Alignment:
Q  98 ctaggagagaatacatgtatcaagaggaagcaacgacattccgactaagttggcaccccgatgaa 162  Q
    ||||||||||  ||||  ||||||  ||| |||||||||||| |||| |||||||||||||||||    
T  16932553 ctaggagagaggacatacatcaaggagaaacaacgacattccaactatgttggcaccccgatgaa 16932617  T

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Target: scaffold1667 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold1667
Description:

Target: scaffold1667; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 182
Target Start/End: Original strand, 711 - 777
Alignment:
Q  116 atcaagaggaagcaacgacattccgactaagttggcaccccgatgaatcttcatcctatgccaccaa 182  Q
    |||||||| |||||||||||| ||||||| ||||||||| ||| ||| || ||||||||||| ||||    
T  711 atcaagagaaagcaacgacatcccgactaggttggcacctcgaagaacctccatcctatgccgccaa 777  T

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Target: scaffold0044 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 182
Target Start/End: Complemental strand, 20928 - 20862
Alignment:
Q  116 atcaagaggaagcaacgacattccgactaagttggcaccccgatgaatcttcatcctatgccaccaa 182  Q
    |||||||| |||||||||||| ||||||| ||||||||| ||| ||| || ||||||||||| ||||    
T  20928 atcaagagaaagcaacgacatcccgactaggttggcacctcgaagaacctccatcctatgccgccaa 20862  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 215
Target Start/End: Original strand, 38993112 - 38993207
Alignment:
Q  123 ggaagcaacgacattccgactaagttggcaccccgatgaatcttcatcctatgccaccaatatc---tataaaatttatttaaaaaaggggaaaaa 215  Q
    |||||||||||||| || |||| ||||||||||||  ||| |  ||||||||||| ||||| ||   || |||||||||| |||||||||||||||    
T  38993112 ggaagcaacgacatcccaactaggttggcaccccgcagaacccccatcctatgccgccaatctcagataaaaaatttattaaaaaaaggggaaaaa 38993207  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 2040089 - 2040147
Alignment:
Q  119 aagaggaagcaacgacattccgactaagttggcaccccgatgaatcttcatcctatgcc 177  Q
    |||||| |||| |||||| || |||| ||||||| ||||||||| ||||||||||||||    
T  2040089 aagaggtagcaccgacatcccaactaggttggcatcccgatgaaccttcatcctatgcc 2040147  T

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Target: scaffold0012 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 216
Target Start/End: Complemental strand, 103776 - 103676
Alignment:
Q  116 atcaagaggaagcaacgacattccgactaagttggcaccccgatgaatcttcatcctatgccaccaatatctataaaatttatttaaaaaaggggaaaaa 215  Q
    ||||||||| | || |||||| || |||| |||||||||||||  ||||| |||||||||||  |||  |||| ||| |||||| |||||||||| ||||    
T  103776 atcaagaggcaacatcgacatcccaactaggttggcaccccgagaaatctccatcctatgccgtcaaactctaaaaattttattaaaaaaagggggaaaa 103677  T
Q  216 t 216  Q
    |    
T  103676 t 103676  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 175
Target Start/End: Complemental strand, 24205546 - 24205471
Alignment:
Q  100 aggagagaatacatgtatcaagaggaagcaacgacattccgactaagttggcaccccgatgaatcttcatcctatg 175  Q
    ||||||||  ||||| ||| |||||||  |||||||| || ||||||||||||||| |||||| || |||||||||    
T  24205546 aggagagaggacatgcatcgagaggaaagaacgacatcccaactaagttggcaccctgatgaacctccatcctatg 24205471  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 214
Target Start/End: Original strand, 14372194 - 14372292
Alignment:
Q  116 atcaagaggaagcaacgacattccgactaagttggcaccccgatgaatcttcatcctatgccaccaatatctataaaatttatttaaaaaaggggaaaa 214  Q
    ||||||||| | || |||||| || |||| |||||||| ||||  ||||| ||||||||||| ||||  |||| ||| |||||| |||||| |||||||    
T  14372194 atcaagaggcaacatcgacatcccaactaggttggcactccgagaaatctccatcctatgccgccaaactctaaaaattttattaaaaaaatgggaaaa 14372292  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 214
Target Start/End: Complemental strand, 12436047 - 12435927
Alignment:
Q  93 ataagctaggagagaatacatgtatcaagaggaagcaacgacattccgactaagttggcaccccgatgaatcttcatcctatgccaccaatatctataaa 192  Q
    |||||| ||||||||  ||||| |||| |||| | || |||||| || |||| |||||||||||||  || || ||||||||||| ||||  || | |||    
T  12436047 ataagcaaggagagaggacatgcatcaggaggcatcatcgacatcccaactaggttggcaccccgacaaacctccatcctatgccgccaagctc-aaaaa 12435949  T
Q  193 atttatttaaaaaaggggaaaa 214  Q
    ||||||| ||||| ||||||||    
T  12435948 atttattaaaaaagggggaaaa 12435927  T

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Target: scaffold0111 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 41237 - 41309
Alignment:
Q  110 acatgtatcaagaggaagcaacgacattccgactaagttggcaccccgatgaatcttcatcctatgccaccaa 182  Q
    ||||| |||||| ||||||||||| || || |||| ||||||||||||  ||| | |||||||||||| ||||    
T  41237 acatgcatcaaggggaagcaacgaaatcccaactaggttggcaccccgcagaaccctcatcctatgccgccaa 41309  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 215
Target Start/End: Original strand, 34995472 - 34995555
Alignment:
Q  131 cgacattccgactaagttggcaccccgatgaatcttcatcctatgccaccaatatctataaaatttatttaaaaaaggggaaaaa 215  Q
    |||||| || |||| |||||||||||||   | || ||||||||||||||||  || | |||||||||| |||||||||||||||    
T  34995472 cgacatcccaactaggttggcaccccgagataactccatcctatgccaccaaactcga-aaaatttattaaaaaaaggggaaaaa 34995555  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 209
Target Start/End: Original strand, 36802298 - 36802366
Alignment:
Q  141 actaagttggcaccccgatgaatcttcatcctatgccaccaatatctataaaatttatttaaaaaaggg 209  Q
    |||| |||||||||||||  || || ||||||||||| ||||  |||| |||| |||||||||||||||    
T  36802298 actaggttggcaccccgagaaacctccatcctatgccgccaaactctaaaaaaattatttaaaaaaggg 36802366  T

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