View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14327_low_3 (Length: 613)
Name: NF14327_low_3
Description: NF14327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14327_low_3 |
 | |
|
| [»] chr8 (5 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 429; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 169 - 613
Target Start/End: Complemental strand, 31472640 - 31472197
Alignment:
| Q |
169 |
gaagcgcatgtgcctatagtgggatatgttgctccctttaatttcgttaaatggtcataactctgcctaacattatgcattattaaatgtgaaatcatac |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31472640 |
gaagcgcatgtgcctatagtgggatatgttgctccctttaatttcgttaaatggtcataactctgcctaacattatgcattattaaatgtgaaatcatac |
31472541 |
T |
|
| Q |
269 |
aaggcacatggattataatataggtacgaaaaactttagagtttagatgtatacttggcttgttctccaattgttaggaagtgaattttttcattagtca |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31472540 |
aaggcacatggattataatataggtacgaaaaactttagagtttagatgtatacttggcttgttctccaattgttaggaagtgaattttttcattagtca |
31472441 |
T |
|
| Q |
369 |
tcacatagtttgcctcctcttttttgccacattaccctattcatttcaaatatataatcggtgtacattacatgattgtcacagtatgaaggtacctgga |
468 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31472440 |
tcacatagtttgcctcctc-tttatgccacattaccctattcatttcaaatatataattggtgtacattacatgattgtcacagtatgaaggtacctgga |
31472342 |
T |
|
| Q |
469 |
ctgcaaacacggattaaagaaagaatattgaaaatatttgagatccacaataatttgagttatacattatgtgcacgagtggcatatgtatatgtcttct |
568 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31472341 |
ctgcaaacacggattaaagaaagaatattgaaaatatttgagatccacaataatttgagttatacattatgtgcacgagtggcatatgtatatgtcttct |
31472242 |
T |
|
| Q |
569 |
ttgggttccaaccatgcttgcattaataaataaaaatatgataat |
613 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31472241 |
ttgggttccaaccatgcttgcattaataaataaaaatatgataat |
31472197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 43 - 134
Target Start/End: Complemental strand, 31472752 - 31472661
Alignment:
| Q |
43 |
gcatggtacttgtttgctatgttactttttctttagttttctctctcttctatatttgaagcttaacttaagaatccatgcatgctctaagt |
134 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31472752 |
gcatggtacttgtttgctatgttactttttctttagttttctctctcttctatatttgaagattaacttaagaatccatgcatgctctaagt |
31472661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 357 - 532
Target Start/End: Complemental strand, 31465824 - 31465650
Alignment:
| Q |
357 |
tttcattagtcatcacatagtttgcctcctcttttttgccacattaccctattcatttcaaatatataatcggtgtacattacatgattgtcacagtatg |
456 |
Q |
| |
|
|||||||||||| ||| ||| |||||||||||| | ||||||||||||||||||||||||||||| ||| ||| ||| ||| |||||||| || |||| |
|
|
| T |
31465824 |
tttcattagtcaccacctagcttgcctcctcttcat-gccacattaccctattcatttcaaatataaaattagtgcacactacttgattgtctcaatatg |
31465726 |
T |
|
| Q |
457 |
aaggtacctggactgcaaacacggattaaagaaagaatattgaaaatatttgagatccacaataatttgagttata |
532 |
Q |
| |
|
||||| | | |||||||| |||||||||||| | | ||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
31465725 |
aaggtgctcgaactgcaaaaccggattaaagaatggtttttggaaagatttgagatccacaataatttgagttata |
31465650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 532 - 588
Target Start/End: Complemental strand, 31475866 - 31475810
Alignment:
| Q |
532 |
acattatgtgcacgagtggcatatgtatatgtcttctttgggttccaaccatgcttg |
588 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
31475866 |
acattatgtgcacgaatggcatatgtacatgtcttctttggtttccaaccatgcttg |
31475810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 504 - 532
Target Start/End: Complemental strand, 31475945 - 31475917
Alignment:
| Q |
504 |
atttgagatccacaataatttgagttata |
532 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
31475945 |
atttgagatccacaataatttgagttata |
31475917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University