View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14327_low_30 (Length: 215)

Name: NF14327_low_30
Description: NF14327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14327_low_30
NF14327_low_30
[»] chr8 (6 HSPs)
chr8 (107-199)||(38815547-38815639)
chr8 (39-111)||(38815728-38815800)
chr8 (110-179)||(39456301-39456371)
chr8 (9-103)||(39456470-39456565)
chr8 (107-179)||(39464003-39464076)
chr8 (1-40)||(38815946-38815985)
[»] chr1 (1 HSPs)
chr1 (9-110)||(39407138-39407241)
[»] chr5 (1 HSPs)
chr5 (4-101)||(20148233-20148332)
[»] scaffold0095 (3 HSPs)
scaffold0095 (110-179)||(13369-13439)
scaffold0095 (9-103)||(13175-13270)
scaffold0095 (107-179)||(24425-24498)
[»] chr2 (3 HSPs)
chr2 (23-79)||(12081236-12081292)
chr2 (110-199)||(12087859-12087948)
chr2 (108-199)||(12081045-12081135)


Alignment Details
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 107 - 199
Target Start/End: Complemental strand, 38815639 - 38815547
Alignment:
Q  107 caccactcaagcttctttgtgcaaataggctcacttgtctttcagcacatggcttaattttaaccttctttttctaaactagatctgcttcat 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38815639 caccactcaagcttctttgtgcaaataggctcacttgtctttcagcacatggcttaattttaaccttctttttctaaactagatctgcttcat 38815547  T

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Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 39 - 111
Target Start/End: Complemental strand, 38815800 - 38815728
Alignment:
Q  39 taagatttagccaattgaaagttgaaatagcatcatagatcgcattctaccacaaggggcatttgcagcacca 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  38815800 taagatttagccaattgaaagttgaaatagcatcatagatcgcattctaccacaaggggcatttgaagcacca 38815728  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 39456371 - 39456301
Alignment:
Q  110 cactcaagcttctttgtgcaaataggctcacttgtctttcagca-catggcttaattttaaccttcttttt 179  Q
    |||||||||||| |||||||||||||||||||||||||||||||  |||||| |||||||||  |||||||    
T  39456371 cactcaagcttcattgtgcaaataggctcacttgtctttcagcataatggctcaattttaacaatcttttt 39456301  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 39456565 - 39456470
Alignment:
Q  9 aataatcaatataat--catttcttaaccacataagatttagccaattgaaagttgaaatagcatcatagatcgcattctaccacaaggggcatttg 103  Q
    ||||||||| |||||  |||||||||| |||||||||||||| ||||||||||||||||||||| | ||  || |||| ||||||||||| ||||||    
T  39456565 aataatcaacataatgtcatttcttaatcacataagatttagtcaattgaaagttgaaatagcaccgta-ttcacattttaccacaagggacatttg 39456470  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 39464076 - 39464003
Alignment:
Q  107 caccactcaagcttctttgtgcaaataggctcacttgtctttcagca-catggcttaattttaaccttcttttt 179  Q
    |||||||||||||||||||||||||| |||||||||| | |||||||  |||||| ||||||| ||||||||||    
T  39464076 caccactcaagcttctttgtgcaaattggctcacttgacattcagcataatggctcaattttagccttcttttt 39464003  T

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Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 38815985 - 38815946
Alignment:
Q  1 agtattgcaataatcaatataatcatttcttaaccacata 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  38815985 agtattgcaataatcaatataatcatttcttaaccacata 38815946  T

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Target: chr1 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 39407138 - 39407241
Alignment:
Q  9 aataatcaatataat--catttcttaaccacataagatttagccaattgaaagttgaaatagcatcatagatcgcattctaccacaaggggcatttgcag 106  Q
    |||||||||||||||  |||||| |||||||||||||||||| ||||| |||||||||||| ||||||||||| |||||||||| ||| |||||||| ||    
T  39407138 aataatcaatataatttcatttcctaaccacataagatttagtcaattcaaagttgaaatatcatcatagatcacattctaccaaaagcggcatttgaag 39407237  T
Q  107 cacc 110  Q
    ||||    
T  39407238 cacc 39407241  T

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Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 20148332 - 20148233
Alignment:
Q  4 attgcaataatcaatataat--catttcttaaccacataagatttagccaattgaaagttgaaatagcatcatagatcgcattctaccacaaggggcatt 101  Q
    |||| |||||||||||||||  |||||||||||||||||||||||||  |||||||||| |||||||||||||||||| |||| ||||||| ||| ||||    
T  20148332 attgtaataatcaatataatatcatttcttaaccacataagatttagttaattgaaagtagaaatagcatcatagatctcattataccacaggggacatt 20148233  T

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Target: scaffold0095 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 13369 - 13439
Alignment:
Q  110 cactcaagcttctttgtgcaaataggctcacttgtctttcagca-catggcttaattttaaccttcttttt 179  Q
    |||||||||||| |||||||||||||||||||||||||||||||  |||||| |||||||||  |||||||    
T  13369 cactcaagcttcattgtgcaaataggctcacttgtctttcagcataatggctcaattttaacaatcttttt 13439  T

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Target: scaffold0095; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 103
Target Start/End: Original strand, 13175 - 13270
Alignment:
Q  9 aataatcaatataat--catttcttaaccacataagatttagccaattgaaagttgaaatagcatcatagatcgcattctaccacaaggggcatttg 103  Q
    ||||||||| |||||  |||||||||| |||||||||||||| ||||||||||||||||||||| | ||  || |||| ||||||||||| ||||||    
T  13175 aataatcaacataatgtcatttcttaatcacataagatttagtcaattgaaagttgaaatagcaccgta-ttcacattttaccacaagggacatttg 13270  T

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Target: scaffold0095; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 24425 - 24498
Alignment:
Q  107 caccactcaagcttctttgtgcaaataggctcacttgtctttcagca-catggcttaattttaaccttcttttt 179  Q
    |||||||||||||||||||||||||| |||||||||| | |||||||  |||||| ||||||| ||||||||||    
T  24425 caccactcaagcttctttgtgcaaattggctcacttgacattcagcataatggctcaattttagccttcttttt 24498  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 12081292 - 12081236
Alignment:
Q  23 tcatttcttaaccacataagatttagccaattgaaagttgaaatagcatcatagatc 79  Q
    |||| |||||| |||||||||||||| ||| ||||||||||||||||||||||||||    
T  12081292 tcatatcttaagcacataagatttagtcaactgaaagttgaaatagcatcatagatc 12081236  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 199
Target Start/End: Complemental strand, 12087948 - 12087859
Alignment:
Q  110 cactcaagcttctttgtgcaaataggctcacttgtctttcagca-catggcttaattttaaccttctttttctaaactagatctgcttcat 199  Q
    ||||||||||| ||  ||||||| | |||| |||||||||||||  ||||||  |||||| ||||||||||| ||||||||| ||||||||    
T  12087948 cactcaagctttttaatgcaaattgtctcatttgtctttcagcataatggctatattttagccttctttttc-aaactagatatgcttcat 12087859  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 199
Target Start/End: Complemental strand, 12081135 - 12081045
Alignment:
Q  108 accactcaagcttctttgtgcaaataggctcacttgtctttcagca-catggcttaattttaaccttctttttctaaactagatctgcttcat 199  Q
    |||||| |||||  |||| |||||| |||||||||||| |||| ||  ||||||||||||||  |||||||||| ||||||| ||||||||||    
T  12081135 accactgaagctaatttgagcaaattggctcacttgtc-ttcaacataatggcttaattttagacttctttttc-aaactagctctgcttcat 12081045  T

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