View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14327_low_32 (Length: 210)
Name: NF14327_low_32
Description: NF14327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14327_low_32 |
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| [»] chr3 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 4 - 210
Target Start/End: Original strand, 36120537 - 36120743
Alignment:
| Q |
4 |
atcataaactatccaaaaggtgggttctacaactaaaggaactcaccgcgacttatctgaccactttcaacagcttaagctccaccttctgcttaagcct |
103 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
36120537 |
atcataaactatctaaaaggtgggttctacaactaaaggaactcaccgcgacttatctaaccactttcaacagcttaagctccaccttctgcttaagcct |
36120636 |
T |
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| Q |
104 |
ctgtctgccaagctcttgcttctgtcttctccagtctcctaaatccaattcctacttgttcttgtcagcccaatatgcataaacatcacagagaccttgc |
203 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36120637 |
ctgtctgccaagctcttgcttctgtcttctccagtcccctaaatccaattcctacttgtttttgtcagcccaatatgcataaacatcacagagaccttgc |
36120736 |
T |
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| Q |
204 |
cttcact |
210 |
Q |
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||||||| |
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| T |
36120737 |
cttcact |
36120743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 41048367 - 41048321
Alignment:
| Q |
4 |
atcataaactatccaaaaggtgggttctacaactaaaggaactcacc |
50 |
Q |
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||||||||||| |||| |||| ||||||||||||||||||||||||| |
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| T |
41048367 |
atcataaactacccaagaggtaggttctacaactaaaggaactcacc |
41048321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 4 - 210
Target Start/End: Original strand, 40566137 - 40566344
Alignment:
| Q |
4 |
atcataaactatccaaaaggtgggttctacaactaaaggaactcaccgcgacttatctgaccactttcaacagcttaagctccaccttctgcttaagcct |
103 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
40566137 |
atcataaactatctaaaaggtgggttctacaactaaaggaactcaccgcgacttatctaaccactttcaacagcttaagctccaccttcaacttaagcct |
40566236 |
T |
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| Q |
104 |
ctgtctgccaagctcttgcttctgtcttctccagtctcctaaatccaa-ttcctacttgttcttgtcagcccaatatgcataaacatcacagagaccttg |
202 |
Q |
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| T |
40566237 |
ctgtctgccaagctcttgcttctgtcttctccagtcccctaaatccaatttcctacttgttcttgtcagcccaatatgcataaacatcacagagaccttg |
40566336 |
T |
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| Q |
203 |
ccttcact |
210 |
Q |
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|||||||| |
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| T |
40566337 |
ccttcact |
40566344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 38812581 - 38812526
Alignment:
| Q |
153 |
tcctacttgttcttgtcagcccaatatgcataaacatcacagagaccttgccttca |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
38812581 |
tcctacttgttcttgtcagcccaatatgcataaacatcatagagaccttgctttca |
38812526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 13620300 - 13620254
Alignment:
| Q |
4 |
atcataaactatccaaaaggtgggttctacaactaaaggaactcacc |
50 |
Q |
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||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
13620300 |
atcataaactacccaagaggtgggttctacaactaaaggaactcacc |
13620254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 52040409 - 52040455
Alignment:
| Q |
4 |
atcataaactatccaaaaggtgggttctacaactaaaggaactcacc |
50 |
Q |
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||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
52040409 |
atcataaactacccaagaggtgggttctacaactaaaggaactcacc |
52040455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 27260494 - 27260540
Alignment:
| Q |
4 |
atcataaactatccaaaaggtgggttctacaactaaaggaactcacc |
50 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
27260494 |
atcataaactatccaagaggtgggttctacaactaaaggaactcacc |
27260540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 1688080 - 1688126
Alignment:
| Q |
4 |
atcataaactatccaaaaggtgggttctacaactaaaggaactcacc |
50 |
Q |
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||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
1688080 |
atcataaactacccaagaggtgggttctacaactaaaggaactcacc |
1688126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 21892003 - 21892049
Alignment:
| Q |
4 |
atcataaactatccaaaaggtgggttctacaactaaaggaactcacc |
50 |
Q |
| |
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||||||||||| |||| |||| ||||||||||||||||||||||||| |
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| T |
21892003 |
atcataaactacccaagaggtaggttctacaactaaaggaactcacc |
21892049 |
T |
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