View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14327_low_7 (Length: 437)
Name: NF14327_low_7
Description: NF14327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14327_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 419; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Original strand, 40074393 - 40074827
Alignment:
| Q |
1 |
tgtctgtgtctcttcttcttcctccatttctcaacctcgaccgcagaggacccgattcctgcgccatggccggaacagttccactcagtcctattcctca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40074393 |
tgtctgtgtctcttcttcttcctccatttctcaacctcgaccgcagaggatccgattcctgcgccatggccggaacagttccactcagtcctattcctca |
40074492 |
T |
|
| Q |
101 |
atagaagcggctctcttcgaaaacaagacttatggtacgattggcccaatggacgaaacttcaatattatccaatatcagcttgatgttctcaaatatga |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40074493 |
acagaagcggctctcttcgaaaacaagacttatggtacgattggcccaatggacgaaacttcaatattatccaatatcagcttgatgttctcaaatatga |
40074592 |
T |
|
| Q |
201 |
ccttgaatggaacaatggcaccacctttctctacactctcgatcctttcaaccacacttgccaagtgactcaatatgatgttggtattccacgacccaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40074593 |
ccttgaatggaacaatggcaccacctttctctacactctcgatcctttcaaccacacttgccaagtgactcaatatgatgttggtattccacgacccaat |
40074692 |
T |
|
| Q |
301 |
tggcttgatggtgctaactatttgggtcaacaatatgccgacaattttctgtgtaatgtttgggagaaagtcggttttatttggtactatgaagatgttc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40074693 |
tggcttgatggtgctaactatttgggtcaacaatatgccgacaattttctgtgtaatgtttgggagaaagtcggttttatttggtactatgaagatgttc |
40074792 |
T |
|
| Q |
401 |
tcactaaaagacctgtcaagtggattttcttcgac |
435 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||| |
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|
| T |
40074793 |
tcactaaaagacctgtcaagtggatcttctacgac |
40074827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 11 - 430
Target Start/End: Original strand, 40086477 - 40086896
Alignment:
| Q |
11 |
tcttcttcttcctccatttctcaacctcgaccgcagaggacccgattcctgcgccatggccggaacagttccactcagtcctattcctcaatagaagcgg |
110 |
Q |
| |
|
||||| ||||||||||| ||||||| || ||| | | |||| ||||| |||| |||||||||||||| || |||||||||||| | || |||||||| |
|
|
| T |
40086477 |
tcttcctcttcctccatctctcaacatcaaccaaaaacaacccaattccatcgccgtggccggaacagtttcattcagtcctattcataaacagaagcgg |
40086576 |
T |
|
| Q |
111 |
ctctcttcgaaaacaagacttatggtacgattggcccaatggacgaaacttcaatattatccaatatcagcttgatgttctcaaatatgaccttgaatgg |
210 |
Q |
| |
|
| ||||| |||| ||| ||||||||||||||||||| ||||| |||||||| ||||||||||||||||||| |||||||||||||||||| |||||| |
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|
| T |
40086577 |
caatcttcaaaaaaccgacctatggtacgattggcccaaaggacgcaacttcaacattatccaatatcagcttggtgttctcaaatatgacctcgaatgg |
40086676 |
T |
|
| Q |
211 |
aacaatggcaccacctttctctacactctcgatcctttcaaccacacttgccaagtgactcaatatgatgttggtattccacgacccaattggcttgatg |
310 |
Q |
| |
|
|||||||||||| |||||||||| |||||||| ||||| || ||||||||| || | ||| | |||||| ||||||| ||||||||||||||||||| |
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|
| T |
40086677 |
aacaatggcacctcctttctctatactctcgacccttttaatcacacttgcaaaaggcttcattttgatgtgggtattcttcgacccaattggcttgatg |
40086776 |
T |
|
| Q |
311 |
gtgctaactatttgggtcaacaatatgccgacaattttctgtgtaatgtttgggagaaagtcggttttatttggtactatgaagatgttctcactaaaag |
410 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||| | |||||||||||| ||||| |||||| | |||||||| |
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|
| T |
40086777 |
gtgctaactatttgggtcaacaatatgttgataattttctttgtaatgtttgggagaaagttgattttatttggtattatgaggatgttgttactaaaag |
40086876 |
T |
|
| Q |
411 |
acctgtcaagtggattttct |
430 |
Q |
| |
|
|||||| |||||||| |||| |
|
|
| T |
40086877 |
acctgttaagtggatcttct |
40086896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 40080473 - 40080897
Alignment:
| Q |
1 |
tgtctgtgtctcttcttcttcctccatttctcaacctcgaccgcagaggacccgattcctgcgccatggccggaacagttccactcagtcctattcctca |
100 |
Q |
| |
|
||||||||||| ||| | |||||| || | ||||| ||||||||||| || | |||| ||||| |||||| ||||||||||||||||||||||||| | |
|
|
| T |
40080473 |
tgtctgtgtcttttccttttcctcaatctttcaacatcgaccgcagactacacagttccagcgccgtggccgaaacagttccactcagtcctattcctaa |
40080572 |
T |
|
| Q |
101 |
atagaagcggctctcttcgaaaacaagacttatggtacgattggcccaatggacgaaacttcaatattatccaatatcagcttgatgttctcaaatatga |
200 |
Q |
| |
|
| |||||||| |||| ||||| ||||| ||||| ||||||||||| ||||| | |||||| ||| |||| | ||||||| | |||||||||| || |
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|
| T |
40080573 |
acagaagcggtaatcttagaaaaactgacttctggtatgattggcccaacggacgcatcttcaacattttccagaaccagcttggtattctcaaatacga |
40080672 |
T |
|
| Q |
201 |
ccttgaatggaacaatggcaccacctttctctacactctcgatcctttcaaccacacttgccaagtgactcaatatgatgttggtattccacgacccaat |
300 |
Q |
| |
|
||||| ||||||||| | ||| ||||| |||||||| | || ||||||||| ||| ||| ||||| ||| | |||||| ||| ||| || ||||||| |
|
|
| T |
40080673 |
ccttgcatggaacaaccgtacctcctttttctacactgttgaccctttcaactccacatgcgaagtgcttcattttgatgtgggtgttctaccacccaat |
40080772 |
T |
|
| Q |
301 |
tggcttgatggtgctaactatttgggtcaacaatatgccgacaattttctgtgtaatgtttgggagaaagtcggttttatttggtactatgaagatgttc |
400 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| || |||| |||||||| |||||||||||||| || | || |||||| ||||||||||| ||||| |
|
|
| T |
40080773 |
tggcttcatggtgctaactatttgggtcaacaacattccgaaaattttctatgtaatgtttgggaaaaggacgattttatctggtactatgaggatgtcg |
40080872 |
T |
|
| Q |
401 |
tcactaaaagacctgtcaagtggat |
425 |
Q |
| |
|
||||| || ||||||||||||||| |
|
|
| T |
40080873 |
tcactcgaaaacctgtcaagtggat |
40080897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Complemental strand, 47392963 - 47392529
Alignment:
| Q |
1 |
tgtctgtgtctcttcttcttcctccatttctcaacctcgaccgcagaggacccgattcctgcgccatggccggaacagttccactcagtcctattcctca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47392963 |
tgtctgtgtctcttcttcttcctccatttctcaacctcgaccgcagaggatccgattcctgcgccatggccggaacagttccactcagtcctattcctca |
47392864 |
T |
|
| Q |
101 |
atagaagcggctctcttcgaaaacaagacttatggtacgattggcccaatggacgaaacttcaatattatccaatatcagcttgatgttctcaaatatga |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47392863 |
acagaagcggctctcttcgaaaacaagacttatggtacgattggcccaatggacgaaacttcaatattatccaatatcagcttgatgttctcaaatatga |
47392764 |
T |
|
| Q |
201 |
ccttgaatggaacaatggcaccacctttctctacactctcgatcctttcaaccacacttgccaagtgactcaatatgatgttggtattccacgacccaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47392763 |
ccttgaatggaacaatggcaccacctttctctacactctcgatcctttcaaccacacttgccaagtgactcaatatgatgttggtattccacgacccaat |
47392664 |
T |
|
| Q |
301 |
tggcttgatggtgctaactatttgggtcaacaatatgccgacaattttctgtgtaatgtttgggagaaagtcggttttatttggtactatgaagatgttc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47392663 |
tggcttgatggtgctaactatttgggtcaacaatatgccgacaattttctgtgtaatgtttgggagaaagtcggttttatttggtactatgaagatgttc |
47392564 |
T |
|
| Q |
401 |
tcactaaaagacctgtcaagtggattttcttcgac |
435 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||| |
|
|
| T |
47392563 |
tcactaaaagacctgtcaagtggatcttctacgac |
47392529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 298 - 430
Target Start/End: Original strand, 44973412 - 44973544
Alignment:
| Q |
298 |
aattggcttgatggtgctaactatttgggtcaacaatatgccgacaattttctgtgtaatgtttgggagaaagtcggttttatttggtactatgaagatg |
397 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||| || | | || ||||| || |||||||||||||||||||| | ||| ||| ||| |||||||||| |
|
|
| T |
44973412 |
aattggcttgacggtgctacctatttgggtcaagaacaagttgataatttcctatgtaatgtttgggagaaagttgatttcattgtgtattatgaagatg |
44973511 |
T |
|
| Q |
398 |
ttctcactaaaagacctgtcaagtggattttct |
430 |
Q |
| |
|
|||||||| ||| ||||| |||||||| |||| |
|
|
| T |
44973512 |
ttctcactcgaaggcctgttaagtggatcttct |
44973544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 127 - 245
Target Start/End: Original strand, 44973238 - 44973359
Alignment:
| Q |
127 |
gacttatggtacgattggcccaatggacgaaacttcaatattatccaatatcagct---tgatgttctcaaatatgaccttgaatggaacaatggcacca |
223 |
Q |
| |
|
|||||||||||||| |||||||| || |||||||||||||| |||||| |||| || ||||||| | | || ||||||||||||| |||||| ||| |
|
|
| T |
44973238 |
gacttatggtacgactggcccaacggtcgaaacttcaatatcatccaagatcaactcaatgatgttgtagattacgaccttgaatggaccaatggaacct |
44973337 |
T |
|
| Q |
224 |
cctttctctacactctcgatcc |
245 |
Q |
| |
|
|||| | ||||||||| |||| |
|
|
| T |
44973338 |
ccttcatgtacactctccatcc |
44973359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 423
Target Start/End: Original strand, 44974987 - 44975067
Alignment:
| Q |
343 |
aattttctgtgtaatgtttgggagaaagtcggttttatttggtactatgaagatgttctcactaaaagacctgtcaagtgg |
423 |
Q |
| |
|
||||| || |||||||||||| |||||| | ||| ||| |||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
44974987 |
aatttcctttgtaatgtttggacgaaagttgatttcattgtgtactatgaagatgttctcactcgtagacctgttaagtgg |
44975067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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