View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14328_high_10 (Length: 431)
Name: NF14328_high_10
Description: NF14328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14328_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 19 - 430
Target Start/End: Complemental strand, 43575500 - 43575087
Alignment:
| Q |
19 |
gaaaagccttttctggtgctacaagaagattttctcccnnnnnnnn--cccactgatcagctaagctatggcaaggaataagaagagtttacaagccaaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43575500 |
gaaaagccttttctggtgctacaagaagattttctcccttttttttttcccactgatcagctaagctatggcaaggaataagaagagtttacaagccaaa |
43575401 |
T |
|
| Q |
117 |
ctggtgggtatgtcctccttattattannnnnnnggtaaaataagaatcagctctattgaagaattgaattgctcctatttggcattaatttagaacaac |
216 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43575400 |
ctggtgggtatgtcctccttattattatttttttggtaaaataagaatcagctctattgaagaattgaattgctcctatttggcattaagctagaacaac |
43575301 |
T |
|
| Q |
217 |
atgttacacgtaccaggacatgagaagcaaatagtttgtataagtaatttattatgttcacataacatcttgtataaaaatctatgttggattctaagca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43575300 |
atgttacacgtaccaggacatgagaagcaaatagtttgtataagtaatttattatgttcacataacatcttgtataaaaatctatgttggattctaagca |
43575201 |
T |
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| Q |
317 |
aacatattacatatttgattaattatgtcatagaaacagttgcttaatgtatggaaaataacttgtgtacctctttaatctgctaacgttatatctatcc |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43575200 |
aacatattacatatttgattaattatgtcatagaaacagctgcttaatgtatggaaaataacttgtgtacctctttaatctgctaacgttatatctatcc |
43575101 |
T |
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| Q |
417 |
attaatcagcttaa |
430 |
Q |
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|||||||||||||| |
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| T |
43575100 |
attaatcagcttaa |
43575087 |
T |
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