View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14328_high_11 (Length: 421)
Name: NF14328_high_11
Description: NF14328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14328_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 22 - 334
Target Start/End: Complemental strand, 1132657 - 1132351
Alignment:
| Q |
22 |
gatctcatgtatgatcaaatagatataatttgattggtcgaatattttatttttatgtatttttctctttcttgtataacactttcttgacaaataacat |
121 |
Q |
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| T |
1132657 |
gatctcatgtatgatcaaatagatataatttgattggtcgaatattttatttttatgtatttttctctttcttgtataacactttcttgacaaataacat |
1132558 |
T |
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| Q |
122 |
tactcttaatcttaatcttgtnnnnnnntaaaccattgttcttaaatattcaacccttcataattgcaggatgctgtaacttcattttcaacatgtggtg |
221 |
Q |
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| T |
1132557 |
tactcttaatctt------gtaaaaaaataaacaattgttcttaaatattcaacccttcataattgcaggatgctgtaacttcattttcaacatgtggtg |
1132464 |
T |
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| Q |
222 |
aaccaacaaataatactcttgtttgctcccaaaacctcactcccaagaactccaccatcactgcaactattgagtctcaatcatccatttctgccaccgg |
321 |
Q |
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| T |
1132463 |
aaccaacaaataatattcttgtttgctcccaaaacctcactcccaagaactccaccatcactgcaactattgagtctcaatcatccatttctgccaccgg |
1132364 |
T |
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| Q |
322 |
taatactctatgt |
334 |
Q |
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||||||||||||| |
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| T |
1132363 |
taatactctatgt |
1132351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 365 - 397
Target Start/End: Complemental strand, 1132320 - 1132288
Alignment:
| Q |
365 |
agtataaattatgctagcaaaaattgaatgaac |
397 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
1132320 |
agtataaattatgctagcaaaaattgaatgaac |
1132288 |
T |
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