View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14328_high_17 (Length: 309)
Name: NF14328_high_17
Description: NF14328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14328_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 13 - 292
Target Start/End: Original strand, 31315446 - 31315726
Alignment:
| Q |
13 |
aatatcacacttaaccatgaagagtgtctgaccttcgcaaaa-aattagtacaacagttgccctctctaaatacgtgttgaaaagaaatgttaggaatat |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31315446 |
aatatcacacttaaccatgaagagtgtctgaccttcgcaaaaaaattagtgcaacagttgccctctctaaatacgtgttgaaaagaaatgttagaaatat |
31315545 |
T |
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| Q |
112 |
ggttatttaaaccaaataccttgaccaataaagaagcatatacatatgtattctaatggtctatgtgttgaataatatggagaacttctaaggaatttgt |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
31315546 |
ggttatttaaaccaaataccttgaccaataaagaagcatatacatgtgtattctagtggtctatgtgttgaataatatggagaacttctaaagaatttgt |
31315645 |
T |
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| Q |
212 |
ctcacagataacttgatgatcaaaattaagtcatgaaaacaccaaatgactcagcaaaaagtttattcaggtgcccttcgt |
292 |
Q |
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| T |
31315646 |
ctcacaaataacttgatgatcaaaattaagtcatgaaaacaccaaatgactcagcaaaaagtttattcaggtgcccctcgt |
31315726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 5e-50; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 13 - 224
Target Start/End: Original strand, 12667542 - 12667754
Alignment:
| Q |
13 |
aatatcacacttaaccatgaagagtgtctgaccttcgc-aaaaaattagtacaacagttgccctctctaaatacgtgttgaaaagaaatgttaggaatat |
111 |
Q |
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| T |
12667542 |
aatatcacacttaatcatgaagagtgtctgggcttcgccaaaaaatccgttaaacaattgccctctctaaatatgtgttggaaagaaatgttaggaatct |
12667641 |
T |
|
| Q |
112 |
ggttatttaaaccaaataccttgaccaataaagaagcatatacatatgtattctaatggtctatgtgttgaataatatggagaacttctaaggaatttgt |
211 |
Q |
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| T |
12667642 |
gatcatttgaaccaaaaatcttgatcaataaagaagcatatacatgtgtattccaatgatccagatgttgaagaatatggagaacttctaaagaatttgt |
12667741 |
T |
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| Q |
212 |
ctcacagataact |
224 |
Q |
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|||||| |||||| |
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| T |
12667742 |
ctcacacataact |
12667754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 156
Target Start/End: Complemental strand, 26173734 - 26173665
Alignment:
| Q |
87 |
tgttgaaaagaaatgttaggaatatggttatttaaaccaaataccttgaccaataaagaagcatatacat |
156 |
Q |
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| T |
26173734 |
tgttggaaagaaatgttaggaatatgctcatttaacccaaaaatctttaccaacaaagaagcgtatacat |
26173665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 35388672 - 35388733
Alignment:
| Q |
50 |
caaaaaattagtacaacagttgccctctctaaatacgtgttgaaaagaaatgttaggaatat |
111 |
Q |
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| T |
35388672 |
caaaaaatttgtgcaacaacttccctctctaaacacatgttggaaagaaatgttaggaatat |
35388733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 145
Target Start/End: Original strand, 35549428 - 35549500
Alignment:
| Q |
73 |
cctctctaaatacgtgttgaaaagaaatgttaggaatatggttatttaaaccaaataccttgaccaataaaga |
145 |
Q |
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| T |
35549428 |
cctctctaaacacatgttaaaaaaaaaagttaggaatatgcttttttaaaccaaaaatctttatcaataaaga |
35549500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 156
Target Start/End: Original strand, 21688089 - 21688171
Alignment:
| Q |
74 |
ctctctaaatacgtgttgaaaagaaatgttaggaatatggttatttaaaccaaataccttgaccaataaagaagcatatacat |
156 |
Q |
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| T |
21688089 |
ctctctaaacacatgttggaaataaatgttagggatatgctcctttaaaccaaaaatcttcaccaacaaagaagcatatacat |
21688171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 8063179 - 8063102
Alignment:
| Q |
50 |
caaaaaattagtacaacagttgccctctctaaatacgtgttgaaaagaaatgttaggaatatggttatttaaaccaaa |
127 |
Q |
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| T |
8063179 |
caaaaaatttgtgcaacagttttcctctctaagcacatgttggaaagaaatgttaggaatatgctcctttaaaccaaa |
8063102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 156
Target Start/End: Original strand, 35147874 - 35147960
Alignment:
| Q |
70 |
tgccctctctaaatacgtgttgaaaagaaatgttaggaatatggttatttaaaccaaataccttgaccaataaagaagcatatacat |
156 |
Q |
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|||||||| ||| || ||||| ||| |||||||||||||||| | |||||||||||| | || || || |||||||||||||||| |
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| T |
35147874 |
tgccctctttaagcacatgttggaaataaatgttaggaatatgctcatttaaaccaaaaatgtttactaacaaagaagcatatacat |
35147960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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