View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14328_high_21 (Length: 246)
Name: NF14328_high_21
Description: NF14328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14328_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 148 - 233
Target Start/End: Complemental strand, 11646453 - 11646368
Alignment:
| Q |
148 |
tgcaagttattcaacttaacttgttatttaaggaactcaaaaaagagacgatgtttattcaaattcagtgcataccacagagactt |
233 |
Q |
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| T |
11646453 |
tgcaagttattcaacttaacttgttatttaaggaactcaaaaaagagactatgtttattcaaattcagtgcatactacagagactt |
11646368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 11591154 - 11591206
Alignment:
| Q |
1 |
ctctattttcatcctttcaaacattaactgattattgaaaacaacagaacaat |
53 |
Q |
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| T |
11591154 |
ctctattttcatcctttcaaacattaactgatcattgaaaacaacagaacaat |
11591206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 11646513 - 11646461
Alignment:
| Q |
1 |
ctctattttcatcctttcaaacattaactgattattgaaaacaacagaacaat |
53 |
Q |
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| T |
11646513 |
ctctattttcatcctttcaaacattaactgatcattgaaaacaacagaacaat |
11646461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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