View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14328_high_4 (Length: 644)
Name: NF14328_high_4
Description: NF14328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14328_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 40819395 - 40819682
Alignment:
| Q |
1 |
tgttatgagattgaggaagaagattcatgagtttcttctttagttttgtgttccagtagtttt-gatatcattatcagttcttcctggtaattgagcagc |
99 |
Q |
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| T |
40819395 |
tgttatgagattgaggaagaagattcatgagtttcttctttagttttgtgttccagtagtttttgatatcattatcagttcttcctggtaattgagcagc |
40819494 |
T |
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| Q |
100 |
tataattgaccacctaaaacaatatcatgaaaataagacaaaaa---atatag-nnnnnnnnncattaaccaaacaatatatatgagtggatgatgatgc |
195 |
Q |
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| T |
40819495 |
tataattgaccacctaaaacaatatcatgaaaataagacaaaaaaatatatagttttctttttcattaaccaaacaatatatatgagtggatgatgatgc |
40819594 |
T |
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| Q |
196 |
tagatctaaacttgaaatctatgtagtcaaaatataggtagattatagatgaggttttaatcaaaatggaagaaatgcttataaaaaa |
283 |
Q |
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| T |
40819595 |
tagatctaaacttgaaatctatgtagtcaaaatataggtagattatagatgaggttttaatcataatggaagaaatgcttataaaaaa |
40819682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 369 - 626
Target Start/End: Original strand, 40819700 - 40819960
Alignment:
| Q |
369 |
gggaaagaaaatgtcaatgtcaatatttctggatctggacatttaatttgaaagtagattattaggtatnnnnnnnnnnnnnn--tgtgtgaaaataagt |
466 |
Q |
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| T |
40819700 |
gggaaagaaaatgtcaatgtcaatatttctggatctggatatttaatttgaaagtagattattatgtataaaaagcaaaaaaaaatgtatgaaaataagt |
40819799 |
T |
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| Q |
467 |
acaagtagtactagtagtgagnnnnnnn-ctatatatagtgtataaaaatattagtataataactaatacctgcttccaatattagcataaagagtgcaa |
565 |
Q |
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| T |
40819800 |
acaagtagtaccagtagtgagttttttttctatatatagtgtataaaaatattagtataataactaatacctgcttccaatattagcataaagagtgcaa |
40819899 |
T |
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| Q |
566 |
atgattctgtcttcttcatctgaaaattctccatgcttaatgtttggccttaaatagttaa |
626 |
Q |
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| T |
40819900 |
atgattctgtcttcttcatctgaaaattctccatgcttaatgtttggccttaaatagttaa |
40819960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 7e-23; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 533 - 624
Target Start/End: Complemental strand, 21173906 - 21173815
Alignment:
| Q |
533 |
tacctgcttccaatattagcataaagagtgcaaatgattctgtcttcttcatctgaaaattctccatgcttaatgtttggccttaaatagtt |
624 |
Q |
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| T |
21173906 |
tacctgcttccaatattaacatagagactgcaaattattctgtcttcctcatctgaaaaatcaccatgcttaatgtttggcctaagatagtt |
21173815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 26 - 115
Target Start/End: Complemental strand, 21174634 - 21174544
Alignment:
| Q |
26 |
catgagtttcttctttagttttgtgttccagtagtt-ttgatatcattatcagttcttcctggtaattgagcagctataattgaccaccta |
115 |
Q |
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| T |
21174634 |
catgagttttttcttcaactttgtgttccaatagttcttgatatcattgtctgtcctacctggtaattgagctgctataattgaccaccta |
21174544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 30 - 114
Target Start/End: Original strand, 40253991 - 40254076
Alignment:
| Q |
30 |
agtttcttctttagttttgtgttccagtagtt-ttgatatcattatcagttcttcctggtaattgagcagctataattgaccacct |
114 |
Q |
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| T |
40253991 |
agtttcttcttcaactttgtgttccaatagttctttatatcattatccgttcgtcctggtaattgcgctgctataatggaccacct |
40254076 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 36 - 114
Target Start/End: Complemental strand, 34358338 - 34358259
Alignment:
| Q |
36 |
ttctttagttttgtgttccagt-agttttgatatcattatcagttcttcctggtaattgagcagctataattgaccacct |
114 |
Q |
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| T |
34358338 |
ttctttagtttagtgttccagtgatttttcacatcattatctgttcttcctggtaattgtgctgctataaaggaccacct |
34358259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 115
Target Start/End: Complemental strand, 5113925 - 5113857
Alignment:
| Q |
48 |
gtgttccagtagtt-ttgatatcattatcagttcttcctggtaattgagcagctataattgaccaccta |
115 |
Q |
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| T |
5113925 |
gtgttccagtagttctttatatcattatccgttcgtcctggtaattgtgctgctatgatagaccaccta |
5113857 |
T |
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