View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14328_high_5 (Length: 555)

Name: NF14328_high_5
Description: NF14328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14328_high_5
NF14328_high_5
[»] chr7 (13 HSPs)
chr7 (13-555)||(39564836-39565378)
chr7 (248-555)||(39337079-39337386)
chr7 (248-555)||(39348379-39348686)
chr7 (262-555)||(39548205-39548499)
chr7 (13-192)||(39349002-39349179)
chr7 (13-192)||(39337824-39338002)
chr7 (368-555)||(39365181-39365368)
chr7 (353-555)||(39538932-39539129)
chr7 (13-186)||(39365467-39365652)
chr7 (13-164)||(39547982-39548145)
chr7 (13-172)||(39538618-39538789)
chr7 (13-56)||(39575490-39575533)
chr7 (13-62)||(39589727-39589776)
[»] chr4 (3 HSPs)
chr4 (16-63)||(2897667-2897714)
chr4 (10-56)||(2886667-2886713)
chr4 (16-61)||(2876657-2876702)
[»] chr2 (3 HSPs)
chr2 (12-63)||(44211432-44211483)
chr2 (12-63)||(44223594-44223645)
chr2 (12-63)||(44234416-44234467)


Alignment Details
Target: chr7 (Bit Score: 507; Significance: 0; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 13 - 555
Target Start/End: Original strand, 39564836 - 39565378
Alignment:
Q  13 tcatcaaaggttatagaatgtggttcaaaaggaagaaccattccccttttcctgctatgatttgtttctgaggcaactatttcttgtctaataggagaga 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39564836 tcatcaaaggttatagaatgtggttcaaaaggaagaaccattccccttttcctgctatgatttgtttctgaggcaactatttcttgtctaataggagaga 39564935  T
Q  113 tgcttccacttctactttcaccgtttctcactgtgaagtagctccaatgttatccataaggtgttatgtgaattcaaaatcaactatgtaatagactata 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  39564936 tgcttccacttctactttcaccgtttctcactgtgaagtagctccaatgttatccataaggtgttatgtgaattgaaaatcaactatgtaatagactata 39565035  T
Q  213 actcatctagatattactaaatcactccattttcagtagttatgagatgaaagtacctttatttgtgatctgtgaaaagccatcctttatgaatctcaat 312  Q
     ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39565036 tctcatctagatattactaaatcactacattttcagtagttatgagatgaaagtacctttatttgtgatctgtgaaaagccatcctttatgaatctcaat 39565135  T
Q  313 agatcacttctttccctgctaccaccaattcgctcactgctttgagaatcatctggtataacagtttgatgcttcccaagagctgcatgatcaattttgt 412  Q
    | || |||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39565136 acattacttctttccctgctaccaccaattttttcactgctttgagaatcatctggtataacagtttgatgcttcccaagagctgcatgatcaattttgt 39565235  T
Q  413 agattatcagtacatgaaccgtagtctcatctgttttattatacatctaaggtgacgacactcacgattcaggaaagtgagggcaagcatatagccaaaa 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  39565236 agattatcagtacatgaaccgtagtctcatctgttttattatacatctaaggtgaagacactcacgattcaggaaagtgagggcaagcatatagccaaaa 39565335  T
Q  513 ttgaaaagtaatgtatatccaatcaaagcaccaacacctatcc 555  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  39565336 ttgaaaagtaatgtatatccaatcaaagcaccaacacctatcc 39565378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 248 - 555
Target Start/End: Complemental strand, 39337386 - 39337079
Alignment:
Q  248 gtagttatgagatgaaagtacctttatttgtgatctgtgaaaagccatcctttatgaatctcaatagatcacttctttccctgctaccaccaattcgctc 347  Q
    |||||||||||||||||||||||||||||| || ||  ||||| ||||||||||||||| |||||  || | |||||| |  ||||||||||||| ||||    
T  39337386 gtagttatgagatgaaagtacctttatttgagagcttagaaaaaccatcctttatgaatttcaatgcattagttcttttctggctaccaccaatttgctc 39337287  T
Q  348 actgctttgagaatcatctggtataacagtttgatgcttcccaagagctgcatgatcaattttgtagattatcagtacatgaaccgtagtctcatctgtt 447  Q
    | |||||||||| |||||||||||||||| ||||||||||||||| ||| |||||||||||||| |||||||||||||| |||| |||||||||||||||    
T  39337286 attgctttgagattcatctggtataacagcttgatgcttcccaagtgctacatgatcaattttgaagattatcagtacacgaactgtagtctcatctgtt 39337187  T
Q  448 ttattatacatctaaggtgacgacactcacgattcaggaaagtgagggcaagcatatagccaaaattgaaaagtaatgtatatccaatcaaagcaccaac 547  Q
    |||| ||||||||||||||| || |||||||||||| ||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||    
T  39337186 ttatcatacatctaaggtgaagatactcacgattcaagaaagtgagggcaaggatatatccaaagttgaaaagtaatgtatatccaatcaaagcaccaac 39337087  T
Q  548 acctatcc 555  Q
    || |||||    
T  39337086 acatatcc 39337079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 248 - 555
Target Start/End: Complemental strand, 39348686 - 39348379
Alignment:
Q  248 gtagttatgagatgaaagtacctttatttgtgatctgtgaaaagccatcctttatgaatctcaatagatcacttctttccctgctaccaccaattcgctc 347  Q
    ||||||||||||||||||||||||| |||| || || |||||| |  |||||||||||| |||||| || | |||||| || ||||||||||||| ||||    
T  39348686 gtagttatgagatgaaagtacctttgtttgagagctttgaaaaactttcctttatgaatttcaatacattagttcttttccggctaccaccaatttgctc 39348587  T
Q  348 actgctttgagaatcatctggtataacagtttgatgcttcccaagagctgcatgatcaattttgtagattatcagtacatgaaccgtagtctcatctgtt 447  Q
    | |||||||||| |||||||| ||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||| |||| |||||||||||||||    
T  39348586 attgctttgagattcatctggaataacagtttgatgcttcccaagtgctacatgatcaattttgaagattatcagtacacgaactgtagtctcatctgtt 39348487  T
Q  448 ttattatacatctaaggtgacgacactcacgattcaggaaagtgagggcaagcatatagccaaaattgaaaagtaatgtatatccaatcaaagcaccaac 547  Q
    |||| ||||||||||||||| || |||||||||||| ||||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||    
T  39348486 ttatcatacatctaaggtgaagatactcacgattcaagaaagtgagagcaaggatatatccaaagttgaaaagtaatgtatatccaatcaaagcaccaac 39348387  T
Q  548 acctatcc 555  Q
    || |||||    
T  39348386 acatatcc 39348379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 262 - 555
Target Start/End: Original strand, 39548205 - 39548499
Alignment:
Q  262 aaagtacctttatttgtgatctgtgaaaagccatcctttatgaatctcaatagatcacttctttccctgctaccaccaattcgctcactgctttgagaat 361  Q
    |||||||||||||||| |   |||||||| | ||||||||||||| |||||| || | ||||||  |||| |||||||||| || ||  ||||||||| |    
T  39548205 aaagtacctttatttgagtgttgtgaaaaactatcctttatgaatttcaatacattagttctttttctgccaccaccaatttgcccatcgctttgagatt 39548304  T
Q  362 catctggtataacagtttgatgcttcccaagagctgcatgatcaattttgtagattatcagtacat-gaaccgtagtctcatctgttttattatacatct 460  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||   ||||||||||| |||| |||| |||||||| ||||||| ||||||    
T  39548305 catctggtataacagtttgatgcttcccaagtgctgcatgatcaattttgtattatatcagtacattgaactgtaggctcatctgctttattacacatct 39548404  T
Q  461 aaggtgacgacactcacgattcaggaaagtgagggcaagcatatagccaaaattgaaaagtaatgtatatccaatcaaagcaccaacacctatcc 555  Q
    ||||||| || |||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  39548405 aaggtgaagatactcacgattcaagaaagtgagggcaaggatatagccaaagttgaaaagtaatgtatatccaatcaaagcaccaacacctatcc 39548499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 13 - 192
Target Start/End: Complemental strand, 39349179 - 39349002
Alignment:
Q  13 tcatcaaaggttatagaatgtggttcaaaaggaagaaccattccccttttcctgctatgatttgtttctgaggcaactatttcttgtctaataggagaga 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |  |||| ||||||||||||| |||||||||    
T  39349179 tcatcaaaggttatagaatgtggttcaaaaggaagaaccattccctttttcctactatgatttgtttccgcagcaattatttcttgtctactaggagaga 39349080  T
Q  113 tgcttccacttctactttcaccgtttctcactgtgaagtagctccaatgttatccataaggtgttatgtgaattcaaaat 192  Q
    ||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||  ||||||||||||| |||||    
T  39349079 tgcttccacttctactttctccttttttcactgtgaagtagctccaatgttatccataa--tgttatgtgaattgaaaat 39349002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 13 - 192
Target Start/End: Complemental strand, 39338002 - 39337824
Alignment:
Q  13 tcatcaaaggttatagaatgtggttcaaaaggaagaaccattccccttttcctgctatgatttgtttctgaggcaactatttcttgtctaataggagaga 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||  |||||||||||||||||| |||||||||    
T  39338002 tcatcaaaggttatagaatgtggttcaaaaggaagaaccattccctttttcctactatgatttgttgctgcagcaactatttcttgtctactaggagaga 39337903  T
Q  113 tgcttccacttctactttcaccgtttctcactgtgaagtagctccaatgttatccataaggtgttatgtgaattcaaaat 192  Q
    ||||||| ||||||||||| || ||| |||||||||||| | |||||| ||||||||||||||||||||||||| |||||    
T  39337902 tgcttcctcttctactttctccttttttcactgtgaagt-ggtccaattttatccataaggtgttatgtgaattgaaaat 39337824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 368 - 555
Target Start/End: Complemental strand, 39365368 - 39365181
Alignment:
Q  368 gtataacagtttgatgcttcccaagagctgcatgatcaattttgtagattatcagtacatgaaccgtagtctcatctgttttattatacatctaaggtga 467  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||  ||||||||||| |||  |||||||||| |||| ||||||||||||||||||    
T  39365368 gtataacagttttatgcttcccaagtgctgcatgatcaattttgtagtatatcagtacataaactatagtctcatcggtttaattatacatctaaggtga 39365269  T
Q  468 cgacactcacgattcaggaaagtgagggcaagcatatagccaaaattgaaaagtaatgtatatccaatcaaagcaccaacacctatcc 555  Q
     || |||||||||||| ||||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  39365268 agatactcacgattcaagaaagtgagagcaaggatatatccaaagttgaaaagtaatgtatatccaatcaaagcaccaacacatatcc 39365181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 353 - 555
Target Start/End: Original strand, 39538932 - 39539129
Alignment:
Q  353 tttgagaatcatctggtataacagtttgatgcttcccaagagctgcatgatcaattttgtagattatcagtacatgaaccgtagtctcatctgttttatt 452  Q
    ||||||| || ||||||||||||||||||||||||||||| ||||||| |||||||||||||  ||| | ||  |||    | |||| | || |||||||    
T  39538932 tttgagattcctctggtataacagtttgatgcttcccaagtgctgcataatcaattttgtag--tattaataagtgagt--ttgtcttaact-ttttatt 39539026  T
Q  453 atacatctaaggtgacgacactcacgattcaggaaagtgagggcaagcatatagccaaaattgaaaagtaatgtatatccaatcaaagcaccaacaccta 552  Q
    | |||| |||||||| || ||| |||||||| ||||||||| ||||| ||||| ||||| ||||| | ||||||||||||||||||||||||||||||||    
T  39539027 aaacatttaaggtgaagaaacttacgattcaagaaagtgagagcaaggatatatccaaagttgaagattaatgtatatccaatcaaagcaccaacaccta 39539126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 39365652 - 39365467
Alignment:
Q  13 tcatcaaaggttatagaatgtggttcaaaaggaagaaccattccccttttcctgctatgatttgtttctgaggcaactatttcttgtcta----ata--- 105  Q
    ||||||||||| || |||||||||||||| |||||||||||||| |||||||| ||||| ||||| |||    ||||| ||||||| |||    |||       
T  39365652 tcatcaaaggtgattgaatgtggttcaaatggaagaaccattcctcttttccttctatggtttgtctctacaccaactgtttcttgcctatcggataaag 39365553  T
Q  106 -----ggagagatgcttccacttctactttcaccgtttctcactgtgaagtagctccaatgttatccataaggtgttatgtgaatt 186  Q
         |||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||| |||||| |||||||||||||    
T  39365552 tacttggagagatgcttccacttctactttcgccgtttcgcactgtgaagtagttccaatgttattcataagttgttatgtgaatt 39365467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 13 - 164
Target Start/End: Original strand, 39547982 - 39548145
Alignment:
Q  13 tcatcaaaggttatagaatgtggttcaaaaggaagaaccattccccttttcctgctatgatttgtttctgaggcaactatttcttgtc------------ 100  Q
    ||||||||||| || ||||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||  |||||| |||||||||                
T  39547982 tcatcaaaggtgattgaatgtggttcaaaagggagaaccattcctcttttcctactatgatttgtctctgcagcaactctttcttgtctatcggatgaag 39548081  T
Q  101 taataggagagatgcttccacttctactttcaccgtttctcactgtgaagtagctccaatgtta 164  Q
    || |||||||| ||||||| |||||| |||| || |||||||||||||||||| ||||||||||    
T  39548082 tactaggagaggtgcttccgcttctaatttctccatttctcactgtgaagtagatccaatgtta 39548145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 172
Target Start/End: Original strand, 39538618 - 39538789
Alignment:
Q  13 tcatcaaaggttatagaatgtggttcaaaaggaagaaccattccccttttcctgctatgatttgtttctgaggcaactatttcttgtctaa--------- 103  Q
    ||||||||||| || |||||||||||||| |||||||||||||| |||||||| ||||| ||||| |||    ||||| ||||||  |||              
T  39538618 tcatcaaaggtgattgaatgtggttcaaatggaagaaccattcctcttttccttctatggtttgtctctacaccaactgtttctttcctaccaggtaaag 39538717  T
Q  104 ---taggagagatgcttccacttctactttcaccgtttctcactgtgaagtagctccaatgttatccataag 172  Q
       |||||||||||||||| ||||| ||||  ||||||||||||||||||||||||||||||||||||||||    
T  39538718 tactaggagagatgcttccgcttctgcttttgccgtttctcactgtgaagtagctccaatgttatccataag 39538789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 39575490 - 39575533
Alignment:
Q  13 tcatcaaaggttatagaatgtggttcaaaaggaagaaccattcc 56  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  39575490 tcatcaaaggttatagaatgttgttcaaaaggaagaaccattcc 39575533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 39589727 - 39589776
Alignment:
Q  13 tcatcaaaggttatagaatgtggttcaaaaggaagaaccattcccctttt 62  Q
    ||||||||||| | | |||||||||||||||||||||||||||| |||||    
T  39589727 tcatcaaaggtgacacaatgtggttcaaaaggaagaaccattcctctttt 39589776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 2897667 - 2897714
Alignment:
Q  16 tcaaaggttatagaatgtggttcaaaaggaagaaccattccccttttc 63  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||    
T  2897667 tcaaagattatagaatgtggttcaaaaggaagaatcattccccttttc 2897714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 2886713 - 2886667
Alignment:
Q  10 acatcatcaaaggttatagaatgtggttcaaaaggaagaaccattcc 56  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||    
T  2886713 acatcgtcaaaggctatagaatgtggttcaaaaggaagaaccattcc 2886667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 2876702 - 2876657
Alignment:
Q  16 tcaaaggttatagaatgtggttcaaaaggaagaaccattccccttt 61  Q
    ||||| || ||||||| |||||||||||| ||||||||||||||||    
T  2876702 tcaaatgtgatagaatatggttcaaaaggtagaaccattccccttt 2876657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 44211432 - 44211483
Alignment:
Q  12 atcatcaaaggttatagaatgtggttcaaaaggaagaaccattccccttttc 63  Q
    ||||||||| || ||||||||||||||||| ||||||||||||||| |||||    
T  44211432 atcatcaaaagtgatagaatgtggttcaaatggaagaaccattccctttttc 44211483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 44223594 - 44223645
Alignment:
Q  12 atcatcaaaggttatagaatgtggttcaaaaggaagaaccattccccttttc 63  Q
    ||||||||| || ||||||||||||||||| ||||||||||||||| |||||    
T  44223594 atcatcaaaagtgatagaatgtggttcaaatggaagaaccattccctttttc 44223645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 44234416 - 44234467
Alignment:
Q  12 atcatcaaaggttatagaatgtggttcaaaaggaagaaccattccccttttc 63  Q
    ||||||||| || ||||||||||||||||| ||||||||||||||| |||||    
T  44234416 atcatcaaaagtgatagaatgtggttcaaatggaagaaccattccctttttc 44234467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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