View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14328_low_1 (Length: 724)
Name: NF14328_low_1
Description: NF14328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14328_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 668; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 668; E-Value: 0
Query Start/End: Original strand, 21 - 716
Target Start/End: Complemental strand, 32775577 - 32774882
Alignment:
| Q |
21 |
aggagattagaaacagtggggcttgttagagagacatacgacatcataggtaaagaaagaagcaggtgctgctactcaattactctgccaaacattacag |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32775577 |
aggagattagaaacagtggggcttgttagagagacatacgacatcataagtaaaggaagaagcaggtgctgctactcaattactctgccaaacattacag |
32775478 |
T |
|
| Q |
121 |
tttctataatctggaataatatactctccttaactggaaaatgaagacacaagtcagcgtagtaggagagccttcttaaagtaatattgttgcaagtgta |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32775477 |
tttctataatctggaataatatactctccttaactggaaaatgaagacacaagtcagcgtagtaggagagccttcttaaagtaatattgttgcaagtgta |
32775378 |
T |
|
| Q |
221 |
cctactcatccaataaaatgaaagtacagaaaattgattaatatttcaagacttacaagtcatccaaatgggccagattaaaattttgacaaatccatca |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32775377 |
cctactcatccaataaaatgaaagtacagaaaattgattaatatttcaagacttacaagtcatccaaatgggccagattaaaattttgacaaatccatca |
32775278 |
T |
|
| Q |
321 |
catggttttgacaaagcaaaaattccaagttgtgtggtgaatttaacatatttgtacttgacttttataaatttatcatttaggtttgataaattagacc |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
32775277 |
catggttttgacaaagcaaaaattccaagttgtgtggtgaatttaacatatttgtacttgacttttataaatttatcatttagatttgatcaattagacc |
32775178 |
T |
|
| Q |
421 |
atgcatctaagaaaaatataacttttcctgattttgaagcagagtttagcaaagagtcaaaaatacctatataagcatatgtcatggcctcaaggaaaag |
520 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32775177 |
atgcatctaagaaaaagataacttttcctgattttgaagcagagtttagcaaagagtcaaaaatacctatataagcatatgtcatggcctcgaggaaaag |
32775078 |
T |
|
| Q |
521 |
gatagaccggtgtgtgtgtagaccagcaaccattgggagatgttaaatccttcaatagatttcaatacctcgagatattagcagctggcttagacaaaaa |
620 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32775077 |
gatagaccggtgtgtgtgtagaccagcaaccattgggagatgttaaatccttcaatagatttcaatacctcgagatattagcggctggcttagacaaaaa |
32774978 |
T |
|
| Q |
621 |
agagagcaaattccatgacactgacacacttaaacatccaaattggagtttattattgacaatatcagatataggttcctaattgttcctatgctt |
716 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32774977 |
agagagcaaattccatgacactgacacacttaaacatccaaattggagtttattattgacaatatcagatataggttcctaattgttcctatgctt |
32774882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 32594484 - 32594415
Alignment:
| Q |
23 |
gagattagaaacagtggggcttgttagagagacatacgacatcataggtaaagaaagaagcaggtgctgc |
92 |
Q |
| |
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||||||||||||||||||| |||||||||||||| | ||||||||| |||||| |||||| | ||||||| |
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| T |
32594484 |
gagattagaaacagtggggtttgttagagagacacatgacatcataagtaaaggaagaagtatgtgctgc |
32594415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 650 - 698
Target Start/End: Complemental strand, 32594404 - 32594356
Alignment:
| Q |
650 |
ttaaacatccaaattggagtttattattgacaatatcagatataggttc |
698 |
Q |
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||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
32594404 |
ttaaacatctaaattggagtttagtattgacaatatcagatataggttc |
32594356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 19106198 - 19106122
Alignment:
| Q |
23 |
gagattagaaacagtggggcttgttagagagacatacgacatcataggtaaagaaagaagcaggtgctgctactcaa |
99 |
Q |
| |
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||||||| |||||||||||||||||||||||||| | ||||||||| |||||| |||||| | ||||||| |||||| |
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| T |
19106198 |
gagattaaaaacagtggggcttgttagagagacacatgacatcataagtaaaggaagaagtatgtgctgccactcaa |
19106122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 661 - 697
Target Start/End: Complemental strand, 19106108 - 19106072
Alignment:
| Q |
661 |
aattggagtttattattgacaatatcagatataggtt |
697 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||| |
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| T |
19106108 |
aattggagtttagtattgacaatatcagatataggtt |
19106072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 20922431 - 20922507
Alignment:
| Q |
23 |
gagattagaaacagtggggcttgttagagagacatacgacatcataggtaaagaaagaagcaggtgctgctactcaa |
99 |
Q |
| |
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|||||||||||||||||||||| ||||||||||| | ||||||||| |||||| |||||| | ||||||| |||||| |
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| T |
20922431 |
gagattagaaacagtggggcttattagagagacacatgacatcataagtaaaggaagaagtatgtgctgccactcaa |
20922507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 650 - 698
Target Start/End: Original strand, 20922511 - 20922559
Alignment:
| Q |
650 |
ttaaacatccaaattggagtttattattgacaatatcagatataggttc |
698 |
Q |
| |
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||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
20922511 |
ttaaacatcgaaattggagtttagtattgacaatatcagatataggttc |
20922559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 2350125 - 2350056
Alignment:
| Q |
23 |
gagattagaaacagtggggcttgttagagagacatacgacatcataggtaaagaaagaagcaggtgctgc |
92 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| | ||||||||| |||||| |||||| | ||||||| |
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| T |
2350125 |
gagattagaaacagtggggtttgttagagagacacatgacatcataagtaaaggaagaagtatgtgctgc |
2350056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 650 - 698
Target Start/End: Complemental strand, 2350045 - 2349997
Alignment:
| Q |
650 |
ttaaacatccaaattggagtttattattgacaatatcagatataggttc |
698 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
2350045 |
ttaaacatctaaattggagtttagtattgacaatatcagatataggttc |
2349997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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