View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14328_low_18 (Length: 306)

Name: NF14328_low_18
Description: NF14328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14328_low_18
NF14328_low_18
[»] chr2 (24 HSPs)
chr2 (11-289)||(39138479-39138757)
chr2 (14-289)||(39152892-39153170)
chr2 (14-287)||(39472835-39473117)
chr2 (33-289)||(39604149-39604405)
chr2 (48-289)||(39099420-39099661)
chr2 (33-222)||(39380587-39380776)
chr2 (16-267)||(44624634-44624891)
chr2 (14-289)||(44895178-44895456)
chr2 (33-240)||(39493532-39493739)
chr2 (14-246)||(39196581-39196816)
chr2 (14-240)||(39396723-39396952)
chr2 (29-246)||(39370993-39371210)
chr2 (39-251)||(39144467-39144679)
chr2 (33-230)||(2362574-2362768)
chr2 (96-251)||(44615277-44615432)
chr2 (14-242)||(39216537-39216768)
chr2 (36-251)||(39421279-39421494)
chr2 (29-251)||(39188843-39189065)
chr2 (33-251)||(39425626-39425844)
chr2 (14-246)||(39205813-39206048)
chr2 (170-246)||(39223590-39223666)
chr2 (33-126)||(39126482-39126575)
chr2 (14-123)||(39387565-39387677)
chr2 (29-72)||(39413118-39413161)
[»] chr7 (2 HSPs)
chr7 (11-233)||(19808795-19809014)
chr7 (228-289)||(19808328-19808388)
[»] chr6 (1 HSPs)
chr6 (54-240)||(16114249-16114435)
[»] chr5 (2 HSPs)
chr5 (33-267)||(17060501-17060735)
chr5 (29-242)||(33562169-33562382)
[»] chr8 (1 HSPs)
chr8 (29-131)||(45342956-45343058)
[»] chr3 (1 HSPs)
chr3 (189-251)||(51575859-51575921)


Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 11 - 289
Target Start/End: Complemental strand, 39138757 - 39138479
Alignment:
Q  11 cagagaattttcagtatttttcatgttagctttcagattaagtgctagcttcaatgcttcttctcttacatcatgtttaatcttcggtgagattctaatc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  39138757 cagagaattttcagtatttttcatgttagctttcagattaagtgctagcttcaatgcttcttctcttacatcaggtttaatcttcggtgagattctcatc 39138658  T
Q  111 agttgttctagcagaaagatgcagccatcatcaataatgacagcatgttctccgttcttacaccgtggaataattggcttctgtattatatccaaaacaa 210  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  39138657 agttgttctagcagaaagatgcagccatcatcaataatcacagcatgttctccattcttacaccgtggaataattggcttctgtattatatccaaaacaa 39138558  T
Q  211 cttttgctggatctgatgattcttgcagattaactagaatgacagtttcatcacttgggagcaactgcaaacttgttcc 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39138557 cttttgctggatctgatgattcttgcagattaactagaatgacagtttcatcacttgggagcaactgcaaacttgttcc 39138479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 14 - 289
Target Start/End: Complemental strand, 39153170 - 39152892
Alignment:
Q  14 agaattttcagtatttt---tcatgttagctttcagattaagtgctagcttcaatgcttcttctcttacatcatgtttaatcttcggtgagattctaatc 110  Q
    |||||||||||||||||   | || |||||||||| || | |||| || |||||||||||||||||||||  | |||||||||||||||||||||| |||    
T  39153170 agaattttcagtattttcttttattttagctttcaaatcatgtgcgagtttcaatgcttcttctcttacacaaggtttaatcttcggtgagattctcatc 39153071  T
Q  111 agttgttctagcagaaagatgcagccatcatcaataatgacagcatgttctccgttcttacaccgtggaataattggcttctgtattatatccaaaacaa 210  Q
    ||||||||||||||||||||||||| | |||| ||||| |||||||| |||||||||||| |||||||||||||||| ||||||||||||||||| ||||    
T  39153070 agttgttctagcagaaagatgcagctaccatctataatcacagcatggtctccgttcttataccgtggaataattgggttctgtattatatccaacacaa 39152971  T
Q  211 cttttgctggatctgatgattcttgcagattaactagaatgacagtttcatcacttgggagcaactgcaaacttgttcc 289  Q
     ||||||||||||||||||||||||||| ||| |||||||| |  ||| ||||||||||||||||||||||||||||||    
T  39152970 tttttgctggatctgatgattcttgcaggttatctagaatgtcgcttttatcacttgggagcaactgcaaacttgttcc 39152892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 14 - 287
Target Start/End: Original strand, 39472835 - 39473117
Alignment:
Q  14 agaattttcagtatttt---tcatgttagctttcagattaagtgctagcttcaatgcttcttctcttacatcatgtttaatcttc------ggtgagatt 104  Q
    |||||||||||||||||   |||||||| |||||| || |||||| ||||||||||| |||| | |||||  | |  ||||||||      |||||||||    
T  39472835 agaattttcagtattttctttcatgttaactttcaaatcaagtgcgagcttcaatgcgtctttttttacacaagggctaatcttcagtgacggtgagatt 39472934  T
Q  105 ctaatcagttgttctagcagaaagatgcagccatcatcaataatgacagcatgttctccgttcttacaccgtggaataattggcttctgtattatatcca 204  Q
     | ||||| ||||| | ||||||||||  || | |||||||||| |||||||| ||||| |||||||||||||||||||| || ||| ||||||||||||    
T  39472935 ttcatcagctgttccaacagaaagatgttgctaccatcaataatcacagcatggtctcccttcttacaccgtggaataatcgggttcagtattatatcca 39473034  T
Q  205 aaacaacttttgctggatctgatgattcttgcagattaactagaatgacagtttcatcacttgggagcaactgcaaacttgtt 287  Q
     ||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  39473035 gaacaaattttgctggatctgatgattcttgcagatcaactagaatgtcagtttcatcacttgggagcaactgcaaacttgtt 39473117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 33 - 289
Target Start/End: Complemental strand, 39604405 - 39604149
Alignment:
Q  33 atgttagctttcagattaagtgctagcttcaatgcttcttctcttacatcatgtttaatcttcggtgagattctaatcagttgttctagcagaaagatgc 132  Q
    ||||||| ||||| ||||||||||||||||| ||||||||||||||||  | ||||||| |  |||  |||||| ||||||||||  |||||||  |||     
T  39604405 atgttagatttcaaattaagtgctagcttcattgcttcttctcttacacgaggtttaatatgtggtttgattctcatcagttgtttgagcagaagaatgt 39604306  T
Q  133 agccatcatcaataatgacagcatgttctccgttcttacaccgtggaataattggcttctgtattatatccaaaacaacttttgctggatctgatgattc 232  Q
      | |||||||||||| |||||||  |||||  ||||| ||  | ||||||| || |||||||||||||||||||||||||||| ||||||||||||| |    
T  39604305 ctctatcatcaataattacagcattgtctcccatcttatacttttgaataatgggattctgtattatatccaaaacaacttttgatggatctgatgatcc 39604206  T
Q  233 ttgcagattaactagaatgacagtttcatcacttgggagcaactgcaaacttgttcc 289  Q
    |||||||||| |||||||  ||||||| |||||||||||||||||||||||| ||||    
T  39604205 ttgcagattatctagaatttcagtttcgtcacttgggagcaactgcaaacttcttcc 39604149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 48 - 289
Target Start/End: Complemental strand, 39099661 - 39099420
Alignment:
Q  48 ttaagtgctagcttcaatgcttcttctcttacatcatgtttaatcttcggtgagattctaatcagttgttctagcagaaagatgcagccatcatcaataa 147  Q
    |||||||| |||||||  |||||||||||||||  | |||| || |  ||||||||||| ||||||||||| |||||||  |||   |  ||||||||||    
T  39099661 ttaagtgccagcttcatcgcttcttctcttacacaaggtttgatatgtggtgagattctcatcagttgttcgagcagaagaatgtctctttcatcaataa 39099562  T
Q  148 tgacagcatgttctccgttcttacaccgtggaataattggcttctgtattatatccaaaacaacttttgctggatctgatgattcttgcagattaactag 247  Q
    | |||||||  |||||  ||||| ||  | ||||||| || |||||||||||||||||||| ||||||| |||||||||| || ||||||||||| ||||    
T  39099561 ttacagcattgtctcccatcttatacttttgaataatgggattctgtattatatccaaaacgacttttgatggatctgataatccttgcagattatctag 39099462  T
Q  248 aatgacagtttcatcacttgggagcaactgcaaacttgttcc 289  Q
    |||  ||||||| |||||||||||||||| ||||||| ||||    
T  39099461 aatttcagtttcgtcacttgggagcaacttcaaacttcttcc 39099420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 33 - 222
Target Start/End: Original strand, 39380587 - 39380776
Alignment:
Q  33 atgttagctttcagattaagtgctagcttcaatgcttcttctcttacatcatgtttaatcttcggtgagattctaatcagttgttctagcagaaagatgc 132  Q
    |||| |||||||| || |||||||||| ||| ||||||||||||||||  || || ||| |||||||||| ||| |||||||||||||||||||||||||    
T  39380587 atgtaagctttcaaatcaagtgctagcgtcagtgcttcttctcttacacaatcttcaatattcggtgagactctcatcagttgttctagcagaaagatgc 39380686  T
Q  133 agccatcatcaataatgacagcatgttctccgttcttacaccgtggaataattggcttctgtattatatccaaaacaacttttgctggat 222  Q
     || ||||| || ||| |||||||  ||||| ||||| ||| ||||| |||| || || ||||||||||| |||||||||||||||||||    
T  39380687 ggctatcataaaaaatcacagcattgtctcccttcttgcacagtggattaatcggtttatgtattatatctaaaacaacttttgctggat 39380776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 16 - 267
Target Start/End: Complemental strand, 44624891 - 44624634
Alignment:
Q  16 aattttcagtatttt---tcatgttagctttcagattaagtgctagcttcaatgcttcttctcttacatcatgtttaatcttcggtgagattctaatcag 112  Q
    |||||||||||||||   |||||||||||||||  | | | ||||||||||||||||| |||||||||  | ||||||| || ||||||||| | |||||    
T  44624891 aattttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcag 44624792  T
Q  113 ttgttctagcagaaagatgcagc---catcatcaataatgacagcatgttctccgttcttacaccgtggaataattggcttctgtattatatccaaaaca 209  Q
    || |||||||||| |||||| ||   ||||||||||||| ||||| |  ||||| ||||||    |||| ||||| || ||| |||||||||||||||||    
T  44624791 tttttctagcagatagatgcggctttcatcatcaataatcacagctttgtctcctttcttaggaagtgggataatggggttcagtattatatccaaaaca 44624692  T
Q  210 acttttgctggatctgatgattcttgcagattaactagaatgacagtttcatcacttg 267  Q
    | |||||||||||||||||||||| ||| |||| | |||||| || |||| |||||||    
T  44624691 atttttgctggatctgatgattctcgcaaattatcaagaatgtcaatttcctcacttg 44624634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 14 - 289
Target Start/End: Original strand, 44895178 - 44895456
Alignment:
Q  14 agaattttcagtattt---ttcatgttagctttcagattaagtgctagcttcaatgcttcttctcttacatcatgtttaatcttcggtgagattctaatc 110  Q
    ||||||||||||||||   || ||||||||||| |  ||| |||||||||||||||||| ||||||||||  | |||||||  | ||||| ||||  |||    
T  44895178 agaattttcagtatttccttttatgttagctttgaatttatgtgctagcttcaatgcttgttctcttacacgaggtttaataattggtgacattcccatc 44895277  T
Q  111 agttgttctagcagaaagatgcagccatcatcaataatgacagcatgttctccgttcttacaccgtggaataattggcttctgtattatatccaaaacaa 210  Q
    |||  |||||||||| ||||||  | |||||||||||  | | |||  ||  | ||||||| | |||| ||| | || ||||||||||||||||||||||    
T  44895278 agtgtttctagcagatagatgcgccaatcatcaataaccaaatcattgtcatccttcttactcagtggcatactagggttctgtattatatccaaaacaa 44895377  T
Q  211 cttttgctggatctgatgattcttgcagattaactagaatgacagtttcatcacttgggagcaactgcaaacttgttcc 289  Q
     |||||| |||| |||||||||| ||||| ||||||||||  || |||  |||||||||||||| ||||||||||||||    
T  44895378 gttttgcaggatttgatgattctcgcagagtaactagaatttcattttgctcacttgggagcaattgcaaacttgttcc 44895456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 33 - 240
Target Start/End: Original strand, 39493532 - 39493739
Alignment:
Q  33 atgttagctttcagattaagtgctagcttcaatgcttcttctcttacatcatgtttaatcttcggtgagattctaatcagttgttctagcagaaagatgc 132  Q
    ||||||||||||| || |||||||||||||| |||||||||| |||||| | || |||| |  ||||||||| |  |||||| ||| |||||||  |||     
T  39493532 atgttagctttcatatcaagtgctagcttcattgcttcttcttttacatgaggtctaatatctggtgagattttcctcagttcttcgagcagaagaatgt 39493631  T
Q  133 agccatcatcaataatgacagcatgttctccgttcttacaccgtggaataattggcttctgtattatatccaaaacaacttttgctggatctgatgattc 232  Q
     || ||||||||||||  ||||||  |||||  ||||||||  |  |||||| || |||||||||||||||||||||||||||| ||||||||||||| |    
T  39493632 ggctatcatcaataattgcagcatcgtctcctatcttacactttttaataatggggttctgtattatatccaaaacaacttttgatggatctgatgatcc 39493731  T
Q  233 ttgcagat 240  Q
    ||||||||    
T  39493732 ttgcagat 39493739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 246
Target Start/End: Original strand, 39196581 - 39196816
Alignment:
Q  14 agaattttcagtatttt---tcatgttagctttcagattaagtgctagcttcaatgcttcttctcttacatcatgtttaatcttcggtgagattctaatc 110  Q
    ||||||||||||||| |   ||||||||||||||| || || |||||||||||||||||||| ||| |||  | ||||||| |  ||||||||||| |||    
T  39196581 agaattttcagtattgtcattcatgttagctttcaaatcaaatgctagcttcaatgcttcttttctcacacaaggtttaatatctggtgagattctcatc 39196680  T
Q  111 agttgttctagcagaaagatgcagccatcatcaataatgacagcatgttctccgttcttacaccgtggaataattggcttctgtattatatccaaaacaa 210  Q
    |||||||| |||||| ||||   |  |||| ||||||  |||||||  ||||| || |  ||| ||||||| || || ||| |||| || ||||||||||    
T  39196681 agttgttccagcagatagatttggtaatcaacaataaccacagcattatctcccttttcccactgtggaatgatggggttcagtatcatttccaaaacaa 39196780  T
Q  211 cttttgctggatctgatgattcttgcagattaacta 246  Q
     ||||| |||||||||||||||||||||||||||||    
T  39196781 gttttgatggatctgatgattcttgcagattaacta 39196816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 240
Target Start/End: Original strand, 39396723 - 39396952
Alignment:
Q  14 agaattttcagtatttt---tcatgttagctttcagattaagtgctagcttcaatgcttcttctcttacatcatgtttaatcttcggtgagattctaatc 110  Q
    |||||||||||||||||   | |||| |||| ||| || | |||||||||||| ||||||||||||||||  | || ||||  | ||||||||||| |||    
T  39396723 agaattttcagtattttctctaatgtaagctctcaaatcatgtgctagcttcagtgcttcttctcttacacaaggtctaatagttggtgagattctcatc 39396822  T
Q  111 agttgttctagcagaaagatgcagccatcatcaataatgacagcatgttctccgttcttacaccgtggaataattggcttctgtattatatccaaaacaa 210  Q
    |||| ||||||||   |||||  || ||| |||||||  ||| |||  ||||| ||||||||| |||||||||| || || |||||||||||||||||||    
T  39396823 agttcttctagcacgtagatgtggctatcctcaataaccacaccattgtctcccttcttacacagtggaataatggggttttgtattatatccaaaacaa 39396922  T
Q  211 cttttgctggatctgatgattcttgcagat 240  Q
     | ||| |||||||||||||||| ||||||    
T  39396923 gtcttgatggatctgatgattctagcagat 39396952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 29 - 246
Target Start/End: Complemental strand, 39371210 - 39370993
Alignment:
Q  29 tttcatgttagctttcagattaagtgctagcttcaatgcttcttctcttacatcatgtttaatcttcggtgagattctaatcagttgttctagcagaaag 128  Q
    ||||||||| ||||||| || ||||||||||||||||||||| |||||||||  | | | ||| || ||||||||| | || |||||||||||||| | |    
T  39371210 tttcatgttggctttcatatcaagtgctagcttcaatgcttcatctcttacacaaggctcaatatttggtgagattttcataagttgttctagcagcagg 39371111  T
Q  129 atgcagccatcatcaataatgacagcatgttctccgttcttacaccgtggaataattggcttctgtattatatccaaaacaacttttgctggatctgatg 228  Q
    ||   |  |||| ||||||| ||| |||  ||||| ||||||| | |||||| ||| |  |||||||| ||||||||||||| | ||| |||||||||||    
T  39371110 atttggtaatcagcaataattacaacattgtctcccttcttactcagtggaacaatggtattctgtatcatatccaaaacaaatcttgatggatctgatg 39371011  T
Q  229 attcttgcagattaacta 246  Q
    ||||| |||||| |||||    
T  39371010 attctagcagatcaacta 39370993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 251
Target Start/End: Complemental strand, 39144679 - 39144467
Alignment:
Q  39 gctttcagattaagtgctagcttcaatgcttcttctcttacatcatgtttaatcttcggtgagattctaatcagttgttctagcagaaagatgcagccat 138  Q
    ||||||| || |||||||||||||| |||||||||| |||||| | ||||||| |   |||||||| |  ||||||  |  |||||||  |||  || ||    
T  39144679 gctttcaaatcaagtgctagcttcattgcttcttcttttacatgaggtttaatatctagtgagattttcctcagttccttgagcagaagaatgtggctat 39144580  T
Q  139 catcaataatgacagcatgttctccgttcttacaccgtggaataattggcttctgtattatatccaaaacaacttttgctggatctgatgattcttgcag 238  Q
    |||||||||| |||||||  |||||  ||||||||  |  |||||| || |||||||||||||||||||||||||||| ||||||||||||| |||| ||    
T  39144579 catcaataattacagcatcgtctcctatcttacactttttaataatcgggttctgtattatatccaaaacaacttttgatggatctgatgatccttgaag 39144480  T
Q  239 attaactagaatg 251  Q
    |||| | ||||||    
T  39144479 attaccaagaatg 39144467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 33 - 230
Target Start/End: Complemental strand, 2362768 - 2362574
Alignment:
Q  33 atgttagctttcagattaagtgctagcttcaatgcttcttctcttacatcatgtttaatcttcggtgagattctaatcagttgttctagcagaaagatgc 132  Q
    |||| ||||||||| |||||||||||||||| |||||||||||  |||| | ||||||  |  ||||||||||| ||||||||||| ||||||   |||     
T  2362768 atgtaagctttcagtttaagtgctagcttcattgcttcttctcgcacatgaggtttaacatgtggtgagattctcatcagttgttcgagcagatcaatgt 2362669  T
Q  133 agccatcatcaataatgacagcatgttctccgttcttacaccgtggaataattggcttctgtattatatccaaaacaacttttgctggatctgatgat 230  Q
     |  |||||||||||| ||| ||| ||||||   ||||||| ||||||| || || ||||| |||||||| |||||| |||||| |||||||||||||    
T  2362668 ggtgatcatcaataattacaacattttctcc---cttacactgtggaatgatggggttctggattatatctaaaacatcttttgatggatctgatgat 2362574  T

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Target: chr2; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 96 - 251
Target Start/End: Complemental strand, 44615432 - 44615277
Alignment:
Q  96 ggtgagattctaatcagttgttctagcagaaagatgcagccatcatcaataatgacagcatgttctccgttcttacaccgtggaataattggcttctgta 195  Q
    ||||||||| | |||||||||||||||||| |||| ||||| ||||||||||| || || |  ||||| ||||||  | |||||||  | || ||  |||    
T  44615432 ggtgagattatcatcagttgttctagcagatagatccagccttcatcaataatcaccgctttgtctcctttcttaggcagtggaatcgtagggtttagta 44615333  T
Q  196 ttatatccaaaacaacttttgctggatctgatgattcttgcagattaactagaatg 251  Q
    ||||||||||||||| |||||||||||||||||||||| ||| |||| ||||||||    
T  44615332 ttatatccaaaacaagttttgctggatctgatgattctcgcaaattatctagaatg 44615277  T

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Target: chr2; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 242
Target Start/End: Complemental strand, 39216768 - 39216537
Alignment:
Q  14 agaattttcagtatttt---tcatgttagctttcagattaagtgctagcttcaatgcttcttctcttacatcatgtttaatcttcggtgagattctaatc 110  Q
    |||||||| ||||||||   ||||||||| ||||| || || ||||||||||||||||||||||||||||  | ||||||| |  ||||||||| | |||    
T  39216768 agaatttttagtattttcactcatgttagatttcaaatcaaatgctagcttcaatgcttcttctcttacacaaggtttaatatgaggtgagattttcatc 39216669  T
Q  111 agttgttctagcagaaagatgcagccatcatcaataatgacagcatgttctccgttcttacaccgtggaataattggcttctgtattatatccaaaacaa 210  Q
    ||||||||||||  | | ||   |  |||| ||||||| |||||||  ||||| |||||||||  | ||||| | || |||||||| |||||||||||||    
T  39216668 agttgttctagcgaataaatatggtaatcagcaataatcacagcattgtctcccttcttacacaattgaatagtagggttctgtatcatatccaaaacaa 39216569  T
Q  211 cttttgctggatctgatgattcttgcagatta 242  Q
     | ||| |||||||||||| ||| ||| ||||    
T  39216568 gtcttgatggatctgatgagtctagcaaatta 39216537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 36 - 251
Target Start/End: Original strand, 39421279 - 39421494
Alignment:
Q  36 ttagctttcagattaagtgctagcttcaatgcttcttctcttacatcatgtttaatcttcggtgagattctaatcagttgttctagcagaaagatgcagc 135  Q
    |||||||||| || ||| || |||||||||||||||||| |||||  |  |||||| |  ||||||||| | ||||||||||||||||||||||||  |     
T  39421279 ttagctttcaaatcaagagcgagcttcaatgcttcttcttttacacaagttttaatatgtggtgagattttcatcagttgttctagcagaaagatgtggt 39421378  T
Q  136 catcatcaataatgacagcatgttctccgttcttacaccgtggaataattggcttctgtattatatccaaaacaacttttgctggatctgatgattcttg 235  Q
      || ||||||||  || |||  ||||| |||||| ||  | ||||||| || ||||||||||||||||||||| | | ||||||||||||  || ||||    
T  39421379 tctcttcaataatcgcatcattgtctcccttcttatacttttgaataatggggttctgtattatatccaaaacagcatgtgctggatctgaaaatccttg 39421478  T
Q  236 cagattaactagaatg 251  Q
    |||||| ||| |||||    
T  39421479 cagattgacttgaatg 39421494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 251
Target Start/End: Original strand, 39188843 - 39189065
Alignment:
Q  29 tttcatgttagctttcagattaagtgctagcttcaatgcttcttctcttacatcatgtttaatcttcggtgagattctaatcagttgttctagcagaaag 128  Q
    ||||||||||||||| | || ||||||||| |||| ||| || |||||||||| | ||||||| |  ||||||||||| ||||||  |   |||||||      
T  39188843 tttcatgttagcttttaaatcaagtgctagtttcattgcatcctctcttacatgaggtttaatgtcaggtgagattctcatcagtactatgagcagaaga 39188942  T
Q  129 atgcagccatcatcaataatgacagcatgttctccgttcttacaccgtggaataattggcttctgtattatatccaaaacaacttttgctggatctgatg 228  Q
    |||  || |||||||||||| ||| |||  |||||  ||| ||||  | ||||||| || ||||||||||||||||||||||||||||  |||||||||     
T  39188943 atgtggctatcatcaataattacaacattgtctcccatctcacacttttgaataatggggttctgtattatatccaaaacaacttttgaaggatctgata 39189042  T
Q  229 attcttgcagattaactagaatg 251  Q
    || |||||| ||| ||| |||||    
T  39189043 atccttgcaaattgacttgaatg 39189065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 251
Target Start/End: Original strand, 39425626 - 39425844
Alignment:
Q  33 atgttagctttcagattaagtgctagcttcaatgcttcttctcttacatcatgtttaatcttcggtgagattctaatcagttgttctagcagaaagatgc 132  Q
    ||||||||||||| || |||||||| ||||| |||||||||| |||||||| || |||| | ||||||||||||  | ||||  |  ||||||   |||     
T  39425626 atgttagctttcaaatcaagtgctaacttcattgcttcttcttttacatcaggtctaatatccggtgagattctcctaagttcattgagcagatgaatgt 39425725  T
Q  133 agccatcatcaataatgacagcatgttctccgttcttacaccgtggaataattggcttctgtattatatccaaaacaacttttgctggatctgatgattc 232  Q
     || ||| |||||||| |||||||  |||||  ||||||||  |  |||||| || ||||||||||| |||||||||||||||| |||||||||  |  |    
T  39425726 ggctatcctcaataataacagcatcatctcccatcttacactttttaataatagggttctgtattatttccaaaacaacttttgatggatctgaaaagcc 39425825  T
Q  233 ttgcagattaactagaatg 251  Q
    |||||||||| ||||||||    
T  39425826 ttgcagattacctagaatg 39425844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 246
Target Start/End: Original strand, 39205813 - 39206048
Alignment:
Q  14 agaattttcagtatttt---tcatgttagctttcagattaagtgctagcttcaatgcttcttctcttacatcatgtttaatcttcggtgagattctaatc 110  Q
    |||||||||||||||||   |||| ||||||||||  | || ||||||||||||||||| |||||| |||  | ||| |||    ||||||||||| |||    
T  39205813 agaattttcagtattttctttcatcttagctttcaagtcaaatgctagcttcaatgctttttctctcacacaaggttcaataactggtgagattctcatc 39205912  T
Q  111 agttgttctagcagaaagatgcagccatcatcaataatgacagcatgttctccgttcttacaccgtggaataattggcttctgtattatatccaaaacaa 210  Q
    |||||||| |||||| | ||   |  |||| ||||||| ||| |||  ||||| || |  ||| ||||| | || || ||| |||| || ||||||||||    
T  39205913 agttgttcaagcagatatatttggtaatcagcaataatcacaacattatctcccttttggcacagtggagtgatggggttcagtatcatttccaaaacaa 39206012  T
Q  211 cttttgctggatctgatgattcttgcagattaacta 246  Q
     ||||| |||||||| ||||||||||||||||||||    
T  39206013 gttttgatggatctgctgattcttgcagattaacta 39206048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 246
Target Start/End: Complemental strand, 39223666 - 39223590
Alignment:
Q  170 acaccgtggaataattggcttctgtattatatccaaaacaacttttgctggatctgatgattcttgcagattaacta 246  Q
    |||||||||||| || || ||| |||| || |||||||||| ||||| |||||||||||||||||||||||||||||    
T  39223666 acaccgtggaatgatggggttcagtatcatttccaaaacaagttttgatggatctgatgattcttgcagattaacta 39223590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 126
Target Start/End: Complemental strand, 39126575 - 39126482
Alignment:
Q  33 atgttagctttcagattaagtgctagcttcaatgcttcttctcttacatcatgtttaatcttcggtgagattctaatcagttgttctagcagaa 126  Q
    ||||||| |||||  ||||| |||||||||| ||||||||||||||||  | ||| ||| ||  |||||||||| ||||||||||| |||||||    
T  39126575 atgttagatttcaatttaagagctagcttcattgcttcttctcttacacgaggttcaatatttagtgagattctcatcagttgttcgagcagaa 39126482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 123
Target Start/End: Original strand, 39387565 - 39387677
Alignment:
Q  14 agaattttcagtatttt---tcatgttagctttcagattaagtgctagcttcaatgcttcttctcttacatcatgttt-aatcttcggtgagattctaat 109  Q
    |||||||||||||||||   ||||||||||||| | || | | ||||||||||||||||||| | ||||| || |||| ||| || |||||| |||| ||    
T  39387565 agaattttcagtattttctttcatgttagcttttaaatcacgcgctagcttcaatgcttctttttttaca-caagtttcaatttttggtgaggttctcat 39387663  T
Q  110 cagttgttctagca 123  Q
    ||||||||||||||    
T  39387664 cagttgttctagca 39387677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 39413118 - 39413161
Alignment:
Q  29 tttcatgttagctttcagattaagtgctagcttcaatgcttctt 72  Q
    ||||| ||||||||||| || |||||||||||||||||||||||    
T  39413118 tttcaagttagctttcaaatcaagtgctagcttcaatgcttctt 39413161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 129; Significance: 9e-67; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 11 - 233
Target Start/End: Complemental strand, 19809014 - 19808795
Alignment:
Q  11 cagagaattttcagtatttttcatgttagctttcagattaagtgctagcttcaatgcttcttctcttacatcatgtttaatcttcggtgagattctaatc 110  Q
    |||||||||||||||| |||||||||||||||||| || ||||||||||||||||| ||||||||||||| || |||||||||||||||||||||| |||    
T  19809014 cagagaattttcagtacttttcatgttagctttcaaatcaagtgctagcttcaatgtttcttctcttacaccaggtttaatcttcggtgagattctcatc 19808915  T
Q  111 agttgttctagcagaaagatgcagccatcatcaataatgacagcatgttctccgttcttacaccgtggaataattggcttctgtattatatccaaaacaa 210  Q
    |||||||||||||||||||  | || | ||||||||   |||||||| ||||| |  ||||| |||||||||||||| || |||||||||||||||||||    
T  19808914 agttgttctagcagaaagacactgctaccatcaata---acagcatggtctccctcgttacatcgtggaataattgggttttgtattatatccaaaacaa 19808818  T
Q  211 cttttgctggatctgatgattct 233  Q
    |||||| ||||||||||||||||    
T  19808817 cttttgttggatctgatgattct 19808795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 19808388 - 19808328
Alignment:
Q  228 gattcttgcagattaactagaatgacagtttcatcacttgggagcaactgcaaacttgttcc 289  Q
    |||||||||||||| ||||||||  ||||| |||||||||||||||||||||||||||||||    
T  19808388 gattcttgcagattgactagaatctcagtt-catcacttgggagcaactgcaaacttgttcc 19808328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 54 - 240
Target Start/End: Complemental strand, 16114435 - 16114249
Alignment:
Q  54 gctagcttcaatgcttcttctcttacatcatgtttaatcttcggtgagattctaatcagttgttctagcagaaagatgcagccatcatcaataatgacag 153  Q
    |||||||||||||||| ||||||||||  | |||||||  | ||||| ||||| ||||||| ||||| |||| |||||  ||  ||||||||||| ||||    
T  16114435 gctagcttcaatgctttttctcttacacgaggtttaatagttggtgatattctcatcagttcttctaacagatagatgtggcattcatcaataatcacag 16114336  T
Q  154 catgttctccgttcttacaccgtggaataattggcttctgtattatatccaaaacaacttttgctggatctgatgattcttgcagat 240  Q
    |||  ||||| ||||||||| ||||| ||   || |||||||||||||||||||||| | ||| |||||||| ||||||||||||||    
T  16114335 cattgtctcccttcttacacagtggagtaccggggttctgtattatatccaaaacaagtcttgatggatctgctgattcttgcagat 16114249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 33 - 267
Target Start/End: Complemental strand, 17060735 - 17060501
Alignment:
Q  33 atgttagctttcagattaagtgctagcttcaatgcttcttctcttacatcatgtttaatcttcggtgagattctaatcagttgttctagcagaaagatgc 132  Q
    |||||||||||||  | | ||||||||||||| ||||| ||| |||||  |  |||||| || ||||| ||| | |||||||||||||||| ||||||||    
T  17060735 atgttagctttcaactcatgtgctagcttcaaagcttcgtcttttacacaagatttaatatttggtgacattatcatcagttgttctagcataaagatgc 17060636  T
Q  133 agccatcatcaataatgacagcatgttctccgttcttacaccgtggaataattggcttctgtattatatccaaaacaacttttgctggatctgatgattc 232  Q
     ||  ||||||||||| ||| | |  ||||| ||||||    |||||||||| || |||  ||||| ||||||||||| ||||| |||||| ||||||||    
T  17060635 ggctttcatcaataatcacaactttgtctcccttcttaggtagtggaataatggggttcattattacatccaaaacaatttttgatggatccgatgattc 17060536  T
Q  233 ttgcagattaactagaatgacagtttcatcacttg 267  Q
    ||||| ||||||||||||| ||| ||| |||||||    
T  17060535 ttgcaaattaactagaatgtcagattcctcacttg 17060501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 29 - 242
Target Start/End: Complemental strand, 33562382 - 33562169
Alignment:
Q  29 tttcatgttagctttcagattaagtgctagcttcaatgcttcttctcttacatcatgtttaatcttcggtgagattctaatcagttgttctagcagaaag 128  Q
    ||||||||||||||||| || || |||||||||||||||||||| ||| |||  | ||| ||| |  ||||||||||| ||||||||||| || ||| ||    
T  33562382 tttcatgttagctttcaaatcaaatgctagcttcaatgcttcttttctcacacaaggttcaatatctggtgagattctcatcagttgttccagaagatag 33562283  T
Q  129 atgcagccatcatcaataatgacagcatgttctccgttcttacaccgtggaataattggcttctgtattatatccaaaacaacttttgctggatctgatg 228  Q
    ||   |  |||| ||||||||||| |||  ||||| || | |||| ||||||  || || ||| |||| || |||||||||| ||||| |||||||||||    
T  33562282 atttggtaatcaacaataatgacaacattgtctcccttttgacacagtggaaagatggggttcagtatcatttccaaaacaagttttgatggatctgatg 33562183  T
Q  229 attcttgcagatta 242  Q
    ||||||||||||||    
T  33562182 attcttgcagatta 33562169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 45343058 - 45342956
Alignment:
Q  29 tttcatgttagctttcagattaagtgctagcttcaatgcttcttctcttacatcatgtttaatcttcggtgagattctaatcagttgttctagcagaaag 128  Q
    ||||| |||||||||||  | |||||||||||| ||||||||||||||||||  | |||||||  | ||  ||||||| |||||||||||||| ||| ||    
T  45343058 tttcacgttagctttcaactcaagtgctagcttgaatgcttcttctcttacacaaggtttaatacttggcaagattctcatcagttgttctaggagatag 45342959  T
Q  129 atg 131  Q
    |||    
T  45342958 atg 45342956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 51575921 - 51575859
Alignment:
Q  189 ttctgtattatatccaaaacaacttttgctggatctgatgattcttgcagattaactagaatg 251  Q
    |||||||||||||||| |||| |||||| ||||||||| ||| || | ||||| |||||||||    
T  51575921 ttctgtattatatccagaacatcttttgatggatctgaggatgctagaagattgactagaatg 51575859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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