View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14328_low_2 (Length: 713)
Name: NF14328_low_2
Description: NF14328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14328_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 19 - 365
Target Start/End: Complemental strand, 38097590 - 38097247
Alignment:
| Q |
19 |
gttggggctcttgtaaattgtattttttaaaccaaattttacattaaacttattttcattaaaataaaacccacacctaaattatttttcttcatactcc |
118 |
Q |
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| T |
38097590 |
gttggggctcttgtaaattgtattttttaaaccaaattttacattaaacttattttcattaaaataaaacccacacctaaattatttttcttcatactcc |
38097491 |
T |
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| Q |
119 |
attgatgaatcaacttataaaagaaatttgataggcttttattttattcaaatcaagttaacttgtattattatttcaaacgaattcatggcacaatcat |
218 |
Q |
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| T |
38097490 |
attgatgaatcaacttataaaagaaatttgataggcttttattttattcaaatcaagttaacttgtattatt---tcaaacgaattcatggcacaatcat |
38097394 |
T |
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| Q |
219 |
atatagaagaatgaaaattacccgaggagcataagagaaagaagtttgtgccaaagcaggagtactatcattagtttgtcgcctagtgaatacaacctct |
318 |
Q |
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| T |
38097393 |
atatagaagaatgaaaattatccgaggagcataagagaaagaagtttgtgccaaagcaggagtactatcattagtttgtcgcctagtgaatacaacctct |
38097294 |
T |
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| Q |
319 |
aagttgttgcaattagataaatgactctaagtagagtcatcaataat |
365 |
Q |
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| T |
38097293 |
aagttgttgcaattagataaatgactctaagtagagtcatcaataat |
38097247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 560 - 701
Target Start/End: Complemental strand, 38096967 - 38096829
Alignment:
| Q |
560 |
gaccagaccagaccagatcaccatcatttcctactctctttggatgatttcataagcggtatgcatttctctttcactnnnnnnnnttttgcctccctct |
659 |
Q |
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| T |
38096967 |
gaccagaccataccagatcaccatcatttcctactctctttggatgatttcataagcggtatgcatttctctttcact---cccccttttgcctccctct |
38096871 |
T |
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| Q |
660 |
tttcctcttttgtttcctttaacttcacctcatccatcccta |
701 |
Q |
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| T |
38096870 |
tttcctcttttgtttcctttaacttcacctcatccatcccta |
38096829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 412 - 539
Target Start/End: Complemental strand, 38097152 - 38097020
Alignment:
| Q |
412 |
aggcttgcattaaggtcacaaatgcactttactaaataagatga-----aatcgagatttgaagagaaattaatattacatgcatcaacctataattgct |
506 |
Q |
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| T |
38097152 |
aggcttgcattaaggtcagaaatgcactttactaaataagatgagatgaaatcgggatttgaaaagaaattaatattacatgcatcaacctataattgct |
38097053 |
T |
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| Q |
507 |
agtgtactcattacatattctacctagactaga |
539 |
Q |
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| T |
38097052 |
agtgtactcattacatattctacctagactaga |
38097020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 248 - 327
Target Start/End: Original strand, 6783773 - 6783852
Alignment:
| Q |
248 |
cataagagaaagaagtttgtgccaaagcaggagtactatcattagtttgtcgcctagtgaatacaacctctaagttgttg |
327 |
Q |
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||||||||| |||||||||||||||| || ||| | ||||||||||| |||||| ||||| ||||| | ||||||||| |
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| T |
6783773 |
cataagagatagaagtttgtgccaaaacatgagctccatcattagtttttcgcctggtgaaaacaacttgaaagttgttg |
6783852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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