View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14328_low_20 (Length: 253)
Name: NF14328_low_20
Description: NF14328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14328_low_20 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 14665491 - 14665743
Alignment:
| Q |
1 |
aaatcttgttgttcctttgtttccaaatgctcgatataaaaactgcaaaattggcaatttgttctcgattaaaattctgcaacatgcagagttttgtttt |
100 |
Q |
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| T |
14665491 |
aaatcttgttgttcctttgtttccaaatgctcgatataaaaactgcaaaattggcaatttgttctcgattaaaattctgcaacatgcagagttttgtttt |
14665590 |
T |
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| Q |
101 |
gtttcggatttgatttgaaaaccactatactaccaactcataaccattttgtaaccaataagtaacgttggcagttattaagttacatagtaagaaattc |
200 |
Q |
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| T |
14665591 |
gtttcggattagatttgaaaaccactatactaccaactcataaccattttgtaaccaataagtaacgttgacagttattaagttacatagtaagaaattc |
14665690 |
T |
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| Q |
201 |
cttgcacaagaagttattgtaactagtttcaaatttaatactttctagctgat |
253 |
Q |
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| T |
14665691 |
cttgcacaaaaagttattgtaactagtttcaaatttaatactttctagctgat |
14665743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 174 - 253
Target Start/End: Complemental strand, 14687941 - 14687862
Alignment:
| Q |
174 |
gttattaagttacatagtaagaaattccttgcacaagaagttattgtaactagtttcaaatttaatactttctagctgat |
253 |
Q |
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| T |
14687941 |
gttattaagttacatagtaagaaattacttgcacaagaagttattgtaactagtttcaaatttaatacattctagctgat |
14687862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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