View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14328_low_23 (Length: 240)

Name: NF14328_low_23
Description: NF14328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14328_low_23
NF14328_low_23
[»] chr4 (6 HSPs)
chr4 (96-229)||(43811174-43811307)
chr4 (96-229)||(44398575-44398708)
chr4 (96-229)||(6127416-6127549)
chr4 (19-108)||(44398739-44398828)
chr4 (18-108)||(43811327-43811417)
chr4 (38-108)||(6127580-6127650)
[»] chr2 (2 HSPs)
chr2 (96-229)||(14659354-14659487)
chr2 (19-104)||(14659504-14659589)


Alignment Details
Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 96 - 229
Target Start/End: Complemental strand, 43811307 - 43811174
Alignment:
Q  96 tgagatcaatttaaacatcaaagttacattgtaagaagaataatccatgagaaagaagttcctctatttaagtttgggatcaatttcaactttaaatcca 195  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43811307 tgagatcaatttaaacatcaaagttacactgtgagaagaataatccatgagaaagaagttcctctatttaagtttgggatcaatttcaactttaaatcca 43811208  T
Q  196 tcaccataataattttttgatttagttatatatt 229  Q
    ||||||||||||||||||||||||||||||||||    
T  43811207 tcaccataataattttttgatttagttatatatt 43811174  T

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Target: chr4; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 96 - 229
Target Start/End: Complemental strand, 44398708 - 44398575
Alignment:
Q  96 tgagatcaatttaaacatcaaagttacattgtaagaagaataatccatgagaaagaagttcctctatttaagtttgggatcaatttcaactttaaatcca 195  Q
    |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44398708 tgagatcaatttaaacatcaaagttacattgtgagaagaataatcgatgagaaagaagttcctctatttaagcttgggatcaatttcaactttaaatcca 44398609  T
Q  196 tcaccataataattttttgatttagttatatatt 229  Q
    |||||||||||||||| |||||||||||||||||    
T  44398608 tcaccataataattttctgatttagttatatatt 44398575  T

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Target: chr4; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 96 - 229
Target Start/End: Complemental strand, 6127549 - 6127416
Alignment:
Q  96 tgagatcaatttaaacatcaaagttacattgtaagaagaataatccatgagaaagaagttcctctatttaagtttgggatcaatttcaactttaaatcca 195  Q
    |||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  6127549 tgagatcaatttaaacatcaaagttacactgtgagaaaaataatccatgagaaagaagttcctttatttaagcttgggatcaatttcaactttaaatcca 6127450  T
Q  196 tcaccataataattttttgatttagttatatatt 229  Q
    ||||||||||||||||||||||||||||||||||    
T  6127449 tcaccataataattttttgatttagttatatatt 6127416  T

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Target: chr4; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 44398828 - 44398739
Alignment:
Q  19 tattcacatataaaacataaaataaactttctaaatcacccgttccttccaaagcattggtaactttcttcccctaatgagatcaattta 108  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  44398828 tattcacatataaaacataaaataaactttctaaaccaccagttccttccaaagcattggtaactttcttcccctaatgagatcaattta 44398739  T

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Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 43811417 - 43811327
Alignment:
Q  18 gtattcacatataaaacataaaataaactttctaaatcacccgttccttccaaagcattggtaactttcttcccctaatgagatcaattta 108  Q
    ||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43811417 gtattcacatataaaacataaaataaactttctgaaccaccagttccttccaaagcattggtaattttcttcccctaatgagatcaattta 43811327  T

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Target: chr4; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 38 - 108
Target Start/End: Complemental strand, 6127650 - 6127580
Alignment:
Q  38 aaataaactttctaaatcacccgttccttccaaagcattggtaactttcttcccctaatgagatcaattta 108  Q
    ||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6127650 aaataaactttctgaaccaccagttccttccaaagcattggtaactttcttcccctaatgagatcaattta 6127580  T

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Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 96 - 229
Target Start/End: Complemental strand, 14659487 - 14659354
Alignment:
Q  96 tgagatcaatttaaacatcaaagttacattgtaagaagaataatccatgagaaagaagttcctctatttaagtttgggatcaatttcaactttaaatcca 195  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  14659487 tgagatcaatttaaacatcaaagttacactgtgagaagaataatccatgagaaagaaattcctctatttaagcttgggatcaatttcaactttaaatcca 14659388  T
Q  196 tcaccataataattttttgatttagttatatatt 229  Q
    ||||||||||||||||||||||| ||||||||||    
T  14659387 tcaccataataattttttgatttggttatatatt 14659354  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 14659589 - 14659504
Alignment:
Q  19 tattcacatataaaacataaaataaactttctaaatcacccgttccttccaaagcattggtaactttcttcccctaatgagatcaa 104  Q
    |||||||||||||||||||||||||||||| | || |||| ||||||||| ||| |||||||||||||||||| ||||||||||||    
T  14659589 tattcacatataaaacataaaataaactttttgaaccaccagttccttcctaagtattggtaactttcttcccttaatgagatcaa 14659504  T

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