View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14328_low_25 (Length: 232)
Name: NF14328_low_25
Description: NF14328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14328_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 22778474 - 22778678
Alignment:
| Q |
13 |
atcaaagggctcaacttcaacgtcatctcgagggaataaaaatgatgcataagaaatccttcttttgttctgatttgtcattaccctgtgttctacactc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22778474 |
atcaaagggctcaacttcaacgtcatctcgagggaataaaaatgatgcataagaaatccttcttttgttctgatttgtcattaccctgtgttctacactc |
22778573 |
T |
|
| Q |
113 |
ttgtattttccattactcaatatctgttcaatgacgaaataagtgaatcgtgcgaattgagcatgacatctatgaagcattaattaaggtacaataacta |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
22778574 |
ttgtattttccattactcaatatctgttcaatgacgaaataagtgaatcgtgcgaattgagcatgacatctataaagcattaattaaggtacaataacta |
22778673 |
T |
|
| Q |
213 |
gacat |
217 |
Q |
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||||| |
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|
| T |
22778674 |
gacat |
22778678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 13 - 142
Target Start/End: Original strand, 22765275 - 22765404
Alignment:
| Q |
13 |
atcaaagggctcaacttcaacgtcatctcgagggaataaaaatgatgcataagaaatccttcttttgttctgatttgtcattaccctgtgttctacactc |
112 |
Q |
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|||||| ||||||| |||||| ||||||||||||| ||||||||||||| ||| ||||||||||||||| |||||| | | | |||||||||||||| |
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| T |
22765275 |
atcaaatggctcaatttcaacatcatctcgagggatcaaaaatgatgcatgggaagtccttcttttgttcttatttgttactgctctgtgttctacactt |
22765374 |
T |
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| Q |
113 |
ttgtattttccattactcaatatctgttca |
142 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
22765375 |
ttgtattttccattactcaatatctgttca |
22765404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 142
Target Start/End: Original strand, 22775095 - 22775224
Alignment:
| Q |
13 |
atcaaagggctcaacttcaacgtcatctcgagggaataaaaatgatgcataagaaatccttcttttgttctgatttgtcattaccctgtgttctacactc |
112 |
Q |
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|||||||||||| |||||||| ||||||||||| || | ||||| ||||| |||| ||||||| ||||| | |||||||||| | ||||||||||||||| |
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| T |
22775095 |
atcaaagggctccacttcaacatcatctcgaggaaacacaaatgttgcatgagaagtccttctcttgtttttatttgtcattgctctgtgttctacactc |
22775194 |
T |
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| Q |
113 |
ttgtattttccattactcaatatctgttca |
142 |
Q |
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|||||| ||||||||||| ||||||||||| |
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| T |
22775195 |
ttgtatcttccattactccatatctgttca |
22775224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 138
Target Start/End: Original strand, 22782605 - 22782723
Alignment:
| Q |
20 |
ggctcaacttcaacgtcatctcgagggaataaaaatgatgcataagaaatccttcttttgttctgatttgtcattaccctgtgttctacactcttgtatt |
119 |
Q |
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|||||||||||||| |||||| |||| || ||||||||||||| |||| ||||||| ||||||| |||||||| | | |||||||||||||| ||| ||| |
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| T |
22782605 |
ggctcaacttcaacatcatcttgaggcaacaaaaatgatgcattagaagtccttctcttgttcttatttgtcactgctctgtgttctacacttttgaatt |
22782704 |
T |
|
| Q |
120 |
ttccattactcaatatctg |
138 |
Q |
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|||| |||||||||||||| |
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| T |
22782705 |
ttccgttactcaatatctg |
22782723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 16085146 - 16085023
Alignment:
| Q |
14 |
tcaaagggctcaacttcaacgtcatctcgagggaataaaaatgatgcataagaaatccttcttttgttctgatttgtcattaccctgtgttctacactct |
113 |
Q |
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|||||||||||||||||||| || ||||||||||| | ||||| ||||||||| |||||| | ||||||| |||||| | | |||||||||||||||| |
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| T |
16085146 |
tcaaagggctcaacttcaacatcttctcgagggaacacaaatgttgcataagacatccttttcttgttcttatttgtga-cgctctgtgttctacactct |
16085048 |
T |
|
| Q |
114 |
tgtattttccattactcaatatctg |
138 |
Q |
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||||||||||||||||| ||||||| |
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| T |
16085047 |
tgtattttccattactccatatctg |
16085023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 131
Target Start/End: Complemental strand, 23278475 - 23278357
Alignment:
| Q |
13 |
atcaaagggctcaacttcaacgtcatctcgagggaataaaaatgatgcataagaaatccttcttttgttctgatttgtcattaccctgtgttctacactc |
112 |
Q |
| |
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|||||||||| ||| |||| | ||||| || ||||| ||||||||| || ||||| ||||||| ||||||| ||||||||| | || || || |||||| |
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| T |
23278475 |
atcaaagggcccaagttcagcatcatcccgggggaacaaaaatgatacaaaagaagtccttctcttgttcttatttgtcatagctctatgctccacactc |
23278376 |
T |
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| Q |
113 |
ttgtattttccattactca |
131 |
Q |
| |
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||||||||||||||||||| |
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| T |
23278375 |
ttgtattttccattactca |
23278357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 22770360 - 22770422
Alignment:
| Q |
77 |
ttgttctgatttgtcattaccctgtgttctacactcttgtattttccattactcaatatctgt |
139 |
Q |
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||||||| |||||| ||| | || ||||| |||||||||||||| |||||||||| ||||||| |
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| T |
22770360 |
ttgttcttatttgtgattgctctatgttccacactcttgtatttgccattactcagtatctgt |
22770422 |
T |
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