View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14328_low_29 (Length: 212)
Name: NF14328_low_29
Description: NF14328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14328_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 39565390 - 39565588
Alignment:
| Q |
1 |
gactcagtgaagaatccgcgagatttcaaaacttcaactcctagcggctcagttgagttaggcagaacctttcataagaaaatatatcaagacatttgat |
100 |
Q |
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| T |
39565390 |
gactcagtgaagaatccgcgagatttcaaaacttcaactcctagcggctcagttgagttaggcagaacctttcataagaaaatatatcaagacatttgat |
39565489 |
T |
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| Q |
101 |
tgtttgaattttcttgtttgcgtaggatcaaactcaatactcagggatttccaatactcgcatgtatttcgtgccaaccactcactagaccttggtggt |
199 |
Q |
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| T |
39565490 |
tgtttgaattttcttgtttgcgtaggatcaaactcaatactcagggatttccaataatcgcatgtatttcgtgccaaccactcactagaccttggtggt |
39565588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 39548511 - 39548597
Alignment:
| Q |
1 |
gactcagtgaagaatccgcgagatttcaaaacttcaactcctagcggctcagttgagttaggcagaacctttcataagaaaatatat |
87 |
Q |
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| T |
39548511 |
gactcagtgaagtatccgcgagatttcaaaacttcaactcctattggatccgtagagttaggaagaaccttccataagaaaatatat |
39548597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 39539150 - 39539219
Alignment:
| Q |
10 |
aagaatccgcgagatttcaaaacttcaactcctagcggctcagttgagttaggcagaacctttcataaga |
79 |
Q |
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| T |
39539150 |
aagaatccgtgagatttcaaaacttcaactcctatcggttccgttgagttagggagaacctttcataaga |
39539219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 39348365 - 39348278
Alignment:
| Q |
3 |
ctcagtgaagaatccgcgagatttcaaaacttcaactcctagcggctcagttgagttaggcagaacctttcataagaaaatatatcaa |
90 |
Q |
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| T |
39348365 |
ctcagtaaagaaactgcgagatttcaaaacttcaactcctagtgattcggttgagttaggaagaacctttcataagaaatcatatcaa |
39348278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 39337065 - 39336978
Alignment:
| Q |
3 |
ctcagtgaagaatccgcgagatttcaaaacttcaactcctagcggctcagttgagttaggcagaacctttcataagaaaatatatcaa |
90 |
Q |
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| T |
39337065 |
ctcagtaaagaaactgcgagatttcaaaacttcaactccaagtgattcggttgagttaggaagaacctttcataggaaaacatatcaa |
39336978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 39365167 - 39365080
Alignment:
| Q |
3 |
ctcagtgaagaatccgcgagatttcaaaacttcaactcctagcggctcagttgagttaggcagaacctttcataagaaaatatatcaa |
90 |
Q |
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| T |
39365167 |
ctcagtaaagaaactgcgagatttcaaaacttcaactcctagtgatccggttgagttaggaagaacctttcacaagaaaacatatcaa |
39365080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 39575788 - 39575862
Alignment:
| Q |
10 |
aagaatccgcgagatttcaaaacttcaactcctagcggctcagttgagttaggcagaacctttcataagaaaatat |
85 |
Q |
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||||| || ||||||| |||||| |||||||||||||| | |||||||||||| |||||| |||| |||||||||| |
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| T |
39575788 |
aagaacccacgagattccaaaacatcaactcctagcggtttagttgagttaggaagaacc-ttcaaaagaaaatat |
39575862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 39622788 - 39622861
Alignment:
| Q |
1 |
gactcagtgaagaatccgcgagatttcaaaacttcaactcctagcggctcagttgagttaggcagaacctttca |
74 |
Q |
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| T |
39622788 |
gactgagtaaagaatccacgagatttcaaaacttgaactcctagtggttctgttgagttcggtacaacctttca |
39622861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 39590016 - 39590092
Alignment:
| Q |
1 |
gactcagtgaagaatccgcgagatttcaaaacttcaactcctagcggctcagttgagttaggcagaacctttcataa |
77 |
Q |
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|||| ||| ||||| || ||||||||||||| |||||||||||||| || || ||||| || |||||||||||||| |
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| T |
39590016 |
gactgagtaaagaaccctcgagatttcaaaatttcaactcctagcgaatccgtcgagttgggaagaacctttcataa |
39590092 |
T |
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