View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14328_low_6 (Length: 522)
Name: NF14328_low_6
Description: NF14328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14328_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 475; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 12 - 505
Target Start/End: Complemental strand, 37808555 - 37808061
Alignment:
| Q |
12 |
acagacacaaatagaggacccctcatccttatacaccaagaaataacaataaccactgacccagagaccacaataccctgcattaacattcacatacatt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37808555 |
acagacacaaatagaggacccctcatccttatacaccaagaaataacaataaccactgacccagagaccacaataccctgcattaacattcacatacatt |
37808456 |
T |
|
| Q |
112 |
taacaacttcaataacaacaattttggtaaacaaaatagttcatgttgagcatttacggcatatgcattgactaacaatgtatatgaattaaattcttaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37808455 |
taacaacttcaataacaacaattttggtaaacaaaatagttcatgttgagcatttacggcatatgcattgactaacaatgtatatgaattaaattcttaa |
37808356 |
T |
|
| Q |
212 |
atttgtacgagcataccgaataagccatagtgagaagcctgatatcgtaacccagcttccattcggtccaatccctatcgacacaaagagcaacaacaat |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37808355 |
atttgtacgagcataccgaataagccatagtgagaagcctgatatcgtaacccagcttccattcggtccaatccctatcgacacaaagagcaacaacaat |
37808256 |
T |
|
| Q |
312 |
ggcttgaactgctcccattgagcacatcaatgctgagcatgaatgatggcatggatattcttcattcaacttagcctgtaaagctcaaacatcatattca |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
37808255 |
ggcttgaactgctcccattgagcacatcaatgctgagcatgaatgatggaatggatattcttcattcaacttagcctgtaaacctcaaacatcatattca |
37808156 |
T |
|
| Q |
412 |
cataaaatattcgaccttaa-taaggaatatggatataactaattaagctaacctggatgattaaccataaagaaaaagagcaaacgcttgctat |
505 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37808155 |
caaaaaatattcgaccttaattaaggaatatggatataactaattaagctaacctggatgattaaccataaagaaaaagagcaaacgcttgctat |
37808061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 217 - 389
Target Start/End: Complemental strand, 37782973 - 37782801
Alignment:
| Q |
217 |
tacgagcataccgaataagccatagtgagaagcctgatatcgtaacccagcttccattcggtccaatccctatcgacacaaagagcaacaacaatggctt |
316 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||||| ||||||| ||||||| ||||||||||| ||||||||||| |
|
|
| T |
37782973 |
tacgagcataccgaataagcaatagtaagaagtctgatatcgtaaccgagcttccattgattccaatctctatcgatacaaagagcaaaaacaatggctt |
37782874 |
T |
|
| Q |
317 |
gaactgctcccattgagcacatcaatgctgagcatgaatgatggcatggatattcttcattcaacttagcctg |
389 |
Q |
| |
|
||| ||| |||||| ||||| ||||||||||||||||| || |||| |||||||||||||||||||||| |
|
|
| T |
37782873 |
gaatcgctgccattgtgcacaccaatgctgagcatgaattgtgttctggaaattcttcattcaacttagcctg |
37782801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 209 - 379
Target Start/End: Complemental strand, 37792331 - 37792161
Alignment:
| Q |
209 |
taaatttgtacgagcataccgaataagccatagtgagaagcctgatatcgtaacccagcttccattcggtccaatccctatcgacacaaagagcaacaac |
308 |
Q |
| |
|
|||| ||||| ||||||||||||||||| | ||||||| ||||||| |||||| |||||||||| |||| |||| || || ||||||| ||||| ||| |
|
|
| T |
37792331 |
taaagttgtatgagcataccgaataagctaccatgagaagtctgatattgtaaccaagcttccattgggtcaaatctctgtccacacaaatagcaaaaac |
37792232 |
T |
|
| Q |
309 |
aatggcttgaactgctcccattgagcacatcaatgctgagcatgaatgatggcatggatattcttcattca |
379 |
Q |
| |
|
|||||||||| ||||||||||| ||||||| || | || ||| ||||||| ||||||||||| ||||| |
|
|
| T |
37792231 |
gatggcttgaattgctcccattgtcgacatcaaagcagtgcttgagtgatggcttggatattctttattca |
37792161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 220 - 388
Target Start/End: Complemental strand, 37802012 - 37801844
Alignment:
| Q |
220 |
gagcataccgaataagccatagtgagaagcctgatatcgtaacccagcttccattcggtccaatccctatcgacacaaagagcaacaacaatggcttgaa |
319 |
Q |
| |
|
||||||||||||||||| | ||||||| ||||||| |||||| |||||||||| |||| |||| || || ||||||| ||||| ||| |||||||||| |
|
|
| T |
37802012 |
gagcataccgaataagctaccatgagaagtctgatattgtaaccaagcttccattgggtcaaatctctgtccacacaaatagcaaaaacgatggcttgaa |
37801913 |
T |
|
| Q |
320 |
ctgctcccattgagcacatcaatgctgagcatgaatgatggcatggatattcttcattcaacttagcct |
388 |
Q |
| |
|
||||||||||| ||||||| || | || ||| ||||||| ||||||||||| ||||| ||||||| |
|
|
| T |
37801912 |
ttgctcccattgtcgacatcaaagcagtgcttgagtgatggcttggatattctttattcattttagcct |
37801844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 37783303 - 37783204
Alignment:
| Q |
20 |
aaatagaggacccctcatccttatacaccaagaaataacaataaccactgacccagagaccacaataccctgcattaacattcacatacatttaacaact |
119 |
Q |
| |
|
||||| |||||| |||||| |||| |||||||||||||||| || |||| | |||||| | ||||| ||||||| |||||||||| | |||||||||||| |
|
|
| T |
37783303 |
aaatataggacctctcatctttatgcaccaagaaataacaacaatcactaatccagaggctacaattccctgcaataacattcacttgcatttaacaact |
37783204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 458 - 494
Target Start/End: Complemental strand, 37781479 - 37781443
Alignment:
| Q |
458 |
gctaacctggatgattaaccataaagaaaaagagcaa |
494 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
37781479 |
gctaacctggataattaaccacaaagaaaaagagcaa |
37781443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University