View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14328_low_8 (Length: 471)
Name: NF14328_low_8
Description: NF14328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14328_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 7 - 452
Target Start/End: Original strand, 29556157 - 29556614
Alignment:
| Q |
7 |
gaagaatatattaacacactactactcttgtttttatcttatgtctcctttttcttcacatgttcatcacttgtttatgccaacaacactagaatttctt |
106 |
Q |
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| T |
29556157 |
gaagaatagatcaacacactactactcttctttttatcttatgtctcctttttcttcacatgttcatcacttgtttatgccaacaacactagaatttctt |
29556256 |
T |
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| Q |
107 |
gaaatggccaacaagttgaagcaaattgcaaaattaatcaccaccgaggttgctccaccgaggtttgtgtctgtgacaaggattccaatgaagaaaatgt |
206 |
Q |
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| T |
29556257 |
aaaatggccaacaagttgaagcaaattgcaaaattaatcaccaccgaggctgctccaccaaggtttgtgtccgtgacaaggattccaatgaagaaaatgt |
29556356 |
T |
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| Q |
207 |
tggataccattgttgaagaagagaataatgattttggttgtgacaaatgcttttcatcatcaacacaaatttgtggttctaattcctttagaagtacact |
306 |
Q |
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| T |
29556357 |
tggataccattgttgaagaagagaataatgattttggttgtgacaaatgcttttcatcatcaacacaaatttgtggctctaattcctttagaagtacact |
29556456 |
T |
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| Q |
307 |
ctcagataggtctttaatttgttga------------atttgttcaacaaatgttgcatattagtttttgagtg-nnnnnnngttgagagaagaataaat |
393 |
Q |
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||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
29556457 |
ctcagataggtctttaatttgttgaacaatttgtagtagttgttcaacaaatgttgcatattag-ttttgagtgttttttttgttgagagaagaataaat |
29556555 |
T |
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| Q |
394 |
aggcagaggagagaatgaacaacaccacttgggttattgacaatgtgttgtttttcttg |
452 |
Q |
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| T |
29556556 |
aggcagaggagagaatgaacaacaccacttgggttattgacaatgtgttgtttttcttg |
29556614 |
T |
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