View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14328_low_9 (Length: 467)
Name: NF14328_low_9
Description: NF14328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14328_low_9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 18 - 467
Target Start/End: Original strand, 6973451 - 6973901
Alignment:
| Q |
18 |
cacctaccaatatataaacggaaattttggtcatgaatccaacatataagtgaagtatcttttgttagaatgtgattttgtgagaatctctaaacaaata |
117 |
Q |
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| T |
6973451 |
cacctaccaatatataaatggaaattttggtcttgaatccgacatataagtaaagtatcttttgttagaatgtgattttgtgagaatctctaaacaaaaa |
6973550 |
T |
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| Q |
118 |
agaacatctcatgtgttcttcttgatgcatatannnnnnn---ggaatgatagtgaagtaggttattattagatcgaactttgtaatttaatctcaccgt |
214 |
Q |
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| T |
6973551 |
agaacatctcatgtgttcttcttgatgcatattttttttttttggaatgatagtgaagtaggttattattagatcgaactttgtaatttaatctcaccgt |
6973650 |
T |
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| Q |
215 |
atcaaagattaactgaattatccaactatttgaacatttattatattatagaataacgtttaaccagacaaatttcatataagagttctgtatttaatat |
314 |
Q |
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| T |
6973651 |
atcaaagattaactgaattatccgactatttgaacatttattat--tatagaataacgtttaaccagacaaatttcatataagagctctgtatttaatat |
6973748 |
T |
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| Q |
315 |
agttaggcgtttgtcatccacgggcatgcaccatatagttgacccatcttaaaggccaaccnnnnnnnaacagtatataataggccttgaatttatttat |
414 |
Q |
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| T |
6973749 |
agttaggcgtttgtcatccatgggcatgcagcatatagttgacccatcttaaaggccaacctttttttaacagtatataataggccttgaatttatttat |
6973848 |
T |
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| Q |
415 |
tatttttaaattaaaaaggaaaagagaagacttcaccccagttgcccccacta |
467 |
Q |
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| T |
6973849 |
tatttttaaattaaaaaggaaaagagaagacttcactccagttgcccccacta |
6973901 |
T |
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